Resources


Database Contributor Review

Salzburg Intensive Care database (SICdb), a freely accessible intensive care database

Niklas Rodemund, Andreas Kokoefer, Bernhard Wernly, Crispiana Cozowicz

The SICdb dataset, version 1.0.6 contains 27386 admissions to an ICU in an Austrian tertiary care institution.

intensive care clinical open data critical care machine learning

Published: June 12, 2023. Version: 1.0.6

Database Open Access

A multi-camera and multimodal dataset for posture and gait analysis

Manuel Palermo, João Mendes Lopes, João André, Joao Cerqueira, Cristina Santos

Multimodal dataset with 166k samples for vision-based applications with a smart walker used in gait and posture rehabilitation. It is equipped with a pair of Depth cameras with data synchronized with an inertial MoCap system worn by the participant.

computer vision inertial motion capture smart walker human pose estimation gait and posture analysis depth rehabilitation deep learning

Published: Nov. 1, 2021. Version: 1.0.0

Database Open Access

Wide-field calcium imaging sleep state database

Eric Landsness, Xiaohui Zhang, Wei Chen, Hanyang Miao, Michelle Tang, Lindsey Brier, Mark Anastasio, Jin-Moo Lee, Joseph Culver

Wide-field calcium imaging database that consists of annotated sleep recording collected from transgenic mice at Washington University of St Louis School of Medicine.

sleep machine learning wide-field calcium imaging sleep state classification sleep staging

Published: March 17, 2022. Version: 1.0.1

Challenge Credentialed Access

MIT Critical Datathon 2023: a MIMIC-IV Derived Dataset for Pulse Oximetry Correction Models

João Matos, Tristan Struja, David S Restrepo, Luis Filipe Nakayama, Jack Gallifant, Luca Weishaupt, Nikita Mullangi, Maria Loureiro, Skyler Shapiro, Adrien Carrel, Leo Anthony Celi

A SaO2-SpO2 Pairs Dataset derived from MIMIC-IV

machine learning health equity pulse oximetry

Published: May 8, 2023. Version: 1.0.0

Database Credentialed Access

Learning to Ask Like a Physician: a Discharge Summary Clinical Questions (DiSCQ) Dataset

Eric Lehman

Dataset of questions asked by medical experts about patients. Medical experts will read a discharge summary line-by-line and (1) ask any question that they may have and (2) record what in the text "triggered" them to ask their question.

machine learning question generation question answering

Published: July 28, 2022. Version: 1.0

Database Restricted Access

REFLACX: Reports and eye-tracking data for localization of abnormalities in chest x-rays

Ricardo Bigolin Lanfredi, Mingyuan Zhang, William Auffermann, Jessica Chan, Phuong-Anh Duong, Vivek Srikumar, Trafton Drew, Joyce Schroeder, Tolga Tasdizen

This dataset contains 3032 cases of eye-tracking data collected while five radiologists dictated reports for frontal chest x-rays, synchronized timestamped dictation transcription, and manual labels for validation of localization of abnormalities.

eye tracking radiology report computer vision machine learning chest x-rays radiology reflacx fixations gaze deep learning

Published: Sept. 27, 2021. Version: 1.0.0

Database Credentialed Access

Chest ImaGenome Dataset

Joy Wu, Nkechinyere Agu, Ismini Lourentzou, Arjun Sharma, Joseph Paguio, Jasper Seth Yao, Edward Christopher Dee, William Mitchell, Satyananda Kashyap, Andrea Giovannini, Leo Anthony Celi, Tanveer Syeda-Mahmood, Mehdi Moradi

The Chest ImaGenome dataset is a scene graph dataset with additional chronological comparison relations for chest X-rays. It is automatically derived from the MIMIC-CXR dataset. A manually annotated gold standard is also available for 500 patients.

multimodal machine learning chest x-ray radiology scene graph visual dialogue object detection semantic reasoning bounding box relation extraction knowledge graph explainability reasoning chest cxr visual question answering deep learning disease progression

Published: July 13, 2021. Version: 1.0.0

Database Contributor Review

HiRID, a high time-resolution ICU dataset

Martin Faltys, Marc Zimmermann, Xinrui Lyu, Matthias Hüser, Stephanie Hyland, Gunnar Rätsch, Tobias Merz

The HiRID database contains a large selection of all routinely collected data relating to patient admissions to the Department of Intensive Care Medicine of the Bern University Hospital, Switzerland (ICU).

intensive care clinical icu high resolution critical care machine learning

Published: Feb. 18, 2021. Version: 1.1.1

Database Credentialed Access

AMR-UTI: Antimicrobial Resistance in Urinary Tract Infections

Michael Oberst, Soorajnath Boominathan, Helen Zhou, Sanjat Kanjilal, David Sontag

AMR-UTI is a freely accessible dataset, derived from electronic health record (EHR) information on over 100,000 urinary tract infections (UTI) treated at Massachusetts General Hospital and Brigham & Women's Hospital in Boston, MA, USA.

antibiotic resistance causal inference policy learning antimicrobial resistance urinary tract infection clinical decision support machine learning

Published: Nov. 4, 2020. Version: 1.0.0

Database Open Access

Electrocardiogram, skin conductance and respiration from spider-fearful individuals watching spider video clips

Frank R Ihmig, Antonio Gogeascoechea, Sarah Schäfer, Johanna Lass-Hennemann, Tanja Michael

Dataset used for development of an algorithm for on-line anxiety level detection from biosignals.

exposure therapy psychophysiology biosignals anxiety disorders wearable sensors anxiety level detection machine learning

Published: June 5, 2020. Version: 1.0.0