Resources


Database Credentialed Access

Annotated Question-Answer Pairs for Clinical Notes in the MIMIC-III Database

Xiang Yue, Xinliang Frederick Zhang, Huan Sun

Annotated Question Answering Pairs for Clinical Notes in the MIMIC-III Database

clinical question answering clinical nlp clinical reading comprehension

Published: Jan. 15, 2021. Version: 1.0.0

Software Open Access

Gradient Algorithm

In finding an optimal stimulus waveform for inducing switches in neuronal states, analytical techniques from optimal control theory are often found to be difficult to use or extremely time intensive. Here, we present the code for a gradient-based al…

optimization

Published: Aug. 21, 2015. Version: 1.0.0

Software Open Access

A Cardiovascular Simulator for Research

We introduce here the Research CardioVascular SIMulator (RCVSIM) software in order to complement research with the experimental data sets provided by PhysioBank. The human cardiovascular model upon which RCVSIM is based includes three major componen…

cardiovascular simulation

Published: Sept. 19, 2001. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext Triage Instruction Corpus

Qingyang Shen, Quan Guo

MIMIC-IV-Ext Triage Instruction Corpus includes 9,629 ED triage cases organized by the five-level ESI, enabling LLMs to improve triage accuracy. It provides CSV data, generation prompts, expert validation samples, and SQL QC scripts.

nlp clinical decision support machine learning large language models emergency severity index emergency triage

Published: March 4, 2025. Version: 1.0.0

Database Credentialed Access

Symile-MIMIC: a multimodal clinical dataset of chest X-rays, electrocardiograms, and blood labs from MIMIC-IV

Adriel Saporta, Aahlad Manas Puli, Mark Goldstein, Rajesh Ranganath

A multimodal clinical dataset consisting of CXRs, ECGs, and blood labs, designed to evaluate Symile, a simple contrastive loss that accommodates any number of modalities and allows any model to produce representations for each modality.

database cxr ecg chest x-ray mimic contrastive learning model multimodal electrocardiogram

Published: Jan. 28, 2025. Version: 1.0.0

Database Credentialed Access

CXR-PRO: MIMIC-CXR with Prior References Omitted

Vignav Ramesh, Nathan Chi, Pranav Rajpurkar

CXR-PRO is an adaptation of the MIMIC-CXR dataset (consisting of chest radiographs and their associated free-text radiology reports) with references to non-existent priors removed.

generation free-text radiology reports references to priors retrieval large language models

Published: Nov. 23, 2022. Version: 1.0.0

Database Credentialed Access

Predictors of Hospital Onset Infection: A Matched Retrospective Cohort Dataset

Ziming Wei, Luke Sagers, Caroline McKenna, Ted Pak, Chanu Rhee, Michael Klompas, Sanjat Kanjilal

NPA-CP is a freely accessible dataset derived from electronic health record (EHR) information at MGB between 2015 and 2024. The dataset includes 11 different pathogens and can be used to predict hospital-onset infections for these pathogens.

electronic health records infection control clinical machine learning infectious diseases hospital onset infection colonization pressure

Published: Nov. 4, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext clinical decision support for referral, triage and diagnosis

Farieda Gaber, Altuna Akalin

This MIMIC-IV extended dataset is designed to evaluate and improve LLMs' ability to assist with triage, specialist referral, and diagnosis, using critical patient information such as history of present illness,vitals signs and other relevant data.

Published: Oct. 8, 2025. Version: 1.0.2

Database Open Access

MIMIC-IV demo data in the Medical Event Data Standard (MEDS)

Robin Philippus van de Water, Ethan Steinberg, Michael Wornow, Patrick Rockenschaub, Matthew McDermott

MIMIC-IV Clinical Database Demo in MEDS (Medical Event Data Standard) format.

ehr critical care electronic health record machine learning mimic meds medical event data standard

Published: Sept. 29, 2025. Version: 0.0.1

Database Credentialed Access

MIMIC-Ext-DrugDetection

Fabrice Harel-Canada, Nanyun Peng, David Goodman, Ruby Romero, Allan Nguyen, Brandon Moghanian, Anabel Salimian

This project offers a multilabel annotated dataset of clinical note sentences from MIMIC-III/IV for substance use detection. It supports NLP research for identifying various co-occurring drug use mentions in patient records.

ehr mimic-iv substance use clinical notes methamphetamine multi-label cocaine drug detection polysubstance use prescription opioid misuse cannabis benzodiazepine misuse injection drug use heroin mimic-iii

Published: Sept. 25, 2025. Version: 1.0.0