Resources


Database Credentialed Access

CXR-PRO: MIMIC-CXR with Prior References Omitted

Vignav Ramesh, Nathan Chi, Pranav Rajpurkar

CXR-PRO is an adaptation of the MIMIC-CXR dataset (consisting of chest radiographs and their associated free-text radiology reports) with references to non-existent priors removed.

generation free-text radiology reports references to priors retrieval large language models

Published: Nov. 23, 2022. Version: 1.0.0

Database Credentialed Access

Annotated Social Determinants of Health Dataset for Adverse Pregnancy Outcomes

Nidhi Soley, MaKhaila Bentil, Jash Shah, Masoud Rouhizadeh, Casey Taylor

This project provides a manually annotated dataset of social determinants of health—social support, occupation, and substance use—linked to pregnancy outcomes, extracted from MIMIC-III and MIMIC-IV discharge summary notes.

Published: Aug. 4, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-Ext-CXR-QBA: A Structured, Tagged, and Localized Visual Question Answering Dataset with Question-Box-Answer Triplets and Scene Graphs for Chest X-ray Images

Philip Müller, Friederike Jungmann, Georgios Kaissis, Daniel Rueckert

We present a large-scale CXR VQA dataset derived from MIMIC-CXR with 42M QA pairs, featuring hierarchical answers, bounding boxes, and structured tags. We generated QA-pairs using LLM-based extraction from radiology reports and localization models.

chest x-rays vqa localization scene graphs

Published: July 22, 2025. Version: 1.0.0

Challenge Credentialed Access

SNOMED CT Entity Linking Challenge

Will Hardman, Mark Banks, Rory Davidson, Donna Truran, Nindya Widita Ayuningtyas, Hoa Ngo, Alistair Johnson, Tom Pollard

272 discharge notes from the MIMIC-IV-Note dataset annotated with SNOMED CT concepts.

snomed entity linking clinical annotation

Published: July 22, 2025. Version: 1.1.0

Database Open Access

Hillel Yaffe Glaucoma Dataset (HYGD): A Gold-Standard Annotated Fundus Dataset for Glaucoma Detection

Or Abramovich, Hadas Pizem, Jonathan Fhima, Eran Berkowitz, Ben Gofrit, Jan Van Eijgen, Eytan Blumenthal, Joachim Behar

HYGD is a rigorously annotated fundus image dataset with gold-standard clinical labels designed to improve and benchmark deep learning models for accurate glaucoma detection.

ophthalmology retina dfi gold-standard gon fundus glaucoma

Published: June 3, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext Cardiac Disease

Jiawei Cao, Sendong Zhao

The subset of the MIMIC-IV dataset includes the examination results and diagnostic information of 4,761 cardiac disease patients. The examination results for each patient are listed separately as evidence for the final diagnosis.

Published: May 6, 2025. Version: 1.0.0

Database Credentialed Access

MeDiSumQA: Patient-Oriented Question-Answer Generation from Discharge Letters

Amin Dada, Osman Alperen Koras, Marie Bauer, Amanda Butler, Kaleb Smith, Jens Kleesiek, Julian Friedrich

MeDiSumQA is a dataset of patient-oriented QA pairs from MIMIC-IV discharge summaries, designed to evaluate LLMs in generating safe, patient-friendly medical responses for clinical QA and healthcare communication.

Published: May 5, 2025. Version: 1.0.0

Database Credentialed Access

Medical Expert Annotations of Unsupported Facts in Doctor-Written and LLM-Generated Patient Summaries

Stefan Hegselmann, Shannon Shen, Florian Gierse, Monica Agrawal, David Sontag, Xiaoyi Jiang

Annotations for unsupported facts in 100 original MIMIC patient summaries (discharge instructions) and hallucinations in 100 Large Language Model (LLM) generated patient summaries labeled by two medical experts.

Published: April 30, 2025. Version: 1.0.1

Database Credentialed Access

MIMIC-III-Ext-tPatchGNN

Chenlong Yin, Weijia Zhang

The processed MIMIC-III dataset for the benchmark of Irregular Multivariate Time Series Forecasting: A Transformable Patching Graph Neural Networks Approach.

Published: April 9, 2025. Version: 1.0.0

Database Open Access

ReXErr-v1: Clinically Meaningful Chest X-Ray Report Errors Derived from MIMIC-CXR

Vishwanatha Rao, Serena Zhang, Julian Acosta, Subathra Adithan, Pranav Rajpurkar

Chest X-Ray reports containing synthetic errors based upon the MIMIC-CXR database. Errors were injected using LLMs and sampled across common human and AI model errors.

Published: March 19, 2025. Version: 1.0.0