Resources


Database Credentialed Access

Chest ImaGenome Dataset

Joy Wu, Nkechinyere Agu, Ismini Lourentzou, Arjun Sharma, Joseph Paguio, Jasper Seth Yao, Edward Christopher Dee, William Mitchell, Satyananda Kashyap, Andrea Giovannini, Leo Anthony Celi, Tanveer Syeda-Mahmood, Mehdi Moradi

The Chest ImaGenome dataset is a scene graph dataset with additional chronological comparison relations for chest X-rays. It is automatically derived from the MIMIC-CXR dataset. A manually annotated gold standard is also available for 500 patients.

machine learning multimodal radiology chest x-ray scene graph visual question answering visual dialogue object detection semantic reasoning bounding box relation extraction knowledge graph explainability reasoning chest cxr deep learning disease progression

Published: July 13, 2021. Version: 1.0.0


Database Credentialed Access

Nosocomial Risk Datasets from MIMIC-III

Travis Goodwin

Text-based Longitudinal Data for Predicting Nosocomial Disease Risk as used by CANTRIP.

deep learning pressure injury risk prediction acute kidney injury anemia forecasting natural language processing

Published: Sept. 15, 2022. Version: 1.0


Database Credentialed Access

CXR-PRO: MIMIC-CXR with Prior References Omitted

Vignav Ramesh, Nathan Chi, Pranav Rajpurkar

CXR-PRO is an adaptation of the MIMIC-CXR dataset (consisting of chest radiographs and their associated free-text radiology reports) with references to non-existent priors removed.

generation large language models free-text radiology reports references to priors retrieval

Published: Nov. 23, 2022. Version: 1.0.0


Database Credentialed Access

MS-CXR-T: Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing

Shruthi Bannur, Stephanie Hyland, Qianchu Liu, Fernando Pérez-García, Max Ilse, Daniel Coelho de Castro, Benedikt Boecking, Harshita Sharma, Kenza Bouzid, Anton Schwaighofer, Maria Teodora Wetscherek, Hannah Richardson, Tristan Naumann, Javier Alvarez Valle, Ozan Oktay

The MS-CXR-T is a multimodal benchmark that enhances the MIMIC-CXR v2 dataset by including expert-verified annotations. Its goal is to evaluate biomedical visual-language processing models in terms of temporal semantics extracted from image and text.

multimodal radiology chest x-ray cxr disease progression vision-language processing

Published: March 17, 2023. Version: 1.0.0


Database Credentialed Access

Chest X-ray Dataset with Lung Segmentation

Wimukthi Indeewara, Mahela Hennayake, Kasun Rathnayake, Thanuja Ambegoda, Dulani Meedeniya

CXLSeg dataset: Chest X-ray with Lung Segmentation, a comparatively large dataset of segmented Chest X-ray radiographs based on the MIMIC-CXR dataset. This contains segmentation results of 243,324 frontal view images and corresponding masks.

segmentation chest x-ray medical reports mimic-cxr u-net chest radiographs

Published: Feb. 8, 2023. Version: 1.0.0


Database Credentialed Access

Electrodermal Activity of Healthy Volunteers while Awake and at Rest

Sandya Subramanian, Patrick Purdon, Riccardo Barbieri, Emery Brown

This database of electrodermal activity was collected from 11 healthy volunteer subjects who were awake and at rest in seated position and 11 (different) healthy volunteer subjects who were under computer-controlled propofol sedation.

autonomic nervous system anesthesia sweat gland activity sympathetic nervous system propofol electrodermal activity

Published: Aug. 26, 2021. Version: 2.0


Database Open Access

Pulse Amplitudes from electrodermal activity collected from healthy volunteer subjects at rest and under controlled sedation

Sandya Subramanian, Patrick Purdon, Riccardo Barbieri, Emery Brown

This database of pulse times and amplitudes from electrodermal activity was collected from 11 healthy volunteer subjects who were awake and at rest and 11 (different) healthy volunteer subjects who were under controlled propofol sedation.

autonomic nervous system anesthesia sweat gland activity sympathetic nervous system propofol electrodermal activity

Published: June 30, 2021. Version: 1.0


Database Credentialed Access

BRAX, a Brazilian labeled chest X-ray dataset

Eduardo Pontes Reis, Joselisa Paiva, Maria Carolina Bueno da Silva, Guilherme Alberto Sousa Ribeiro, Victor Fornasiero Paiva, Lucas Bulgarelli, Henrique Lee, Paulo Victor dos Santos, vanessa brito, Lucas Amaral, Gabriel Beraldo, Jorge Nebhan Haidar Filho, Gustavo Teles, Gilberto Szarf, Tom Pollard, Alistair Johnson, Leo Anthony Celi, Edson Amaro

BRAX contains 24,959 chest radiography exams and 40,967 images acquired in a large general Brazilian hospital. All images have been read by trained radiologists and 14 labels were derived from Brazilian Portuguese reports using NLP.

chest x-ray artificial intelligence dataset

Published: June 17, 2022. Version: 1.1.0


Database Restricted Access

Multitaper spectra recorded during GABAergic anesthetic unconsciousness

John Abel, Marcus Badgeley, Benyamin Meschede-Krasa, Gabe Schamberg, Indie Garwood, Kimaya Lecamwasam, Sourish Chakravarty, David Zhou, Matt Keating, Patrick Purdon, Emery Brown

EEG power spectra recorded during anesthesia

eeg electroencephalography unconsciousness anesthesia

Published: April 19, 2021. Version: 1.0.0


Database Credentialed Access

A Brazilian Multilabel Ophthalmological Dataset (BRSET)

Luis Filipe Nakayama, Mariana Goncalves, Lucas Zago Ribeiro, Helen Santos, Daniel Ferraz, Fernando Malerbi, Leo Anthony Celi, Caio Regatieri

This is the first Brazilian Multilabel Ophthalmological Dataset with demographic information and retinal photos labeled images according to anatomical parameters, quality control, and presumed diagnosis.

dataset ophthalmology retina

Published: March 8, 2023. Version: 1.0.0