Resources


Database Credentialed Access

MS-CXR-T: Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing

Shruthi Bannur, Stephanie Hyland, Qianchu Liu, Fernando Pérez-García, Max Ilse, Daniel Coelho de Castro, Benedikt Boecking, Harshita Sharma, Kenza Bouzid, Anton Schwaighofer, Maria Teodora Wetscherek, Hannah Richardson, Tristan Naumann, Javier Alvarez Valle, Ozan Oktay

The MS-CXR-T is a multimodal benchmark that enhances the MIMIC-CXR v2 dataset by including expert-verified annotations. Its goal is to evaluate biomedical visual-language processing models in terms of temporal semantics extracted from image and text.

chest x-ray multimodal radiology cxr disease progression vision-language processing

Published: March 17, 2023. Version: 1.0.0

Database Open Access

Gesture Recognition and Biometrics ElectroMyogram (GRABMyo)

Ning Jiang, Ashirbad Pradhan, Jiayuan He

Open-access dataset of electromyogram (EMG) recordings collected from the wrist and forearm muscles of 43 people while they performed hand gestures.

Published: Dec. 2, 2022. Version: 1.0.2

Visualize waveforms

Database Credentialed Access

CXR-PRO: MIMIC-CXR with Prior References Omitted

Vignav Ramesh, Nathan Chi, Pranav Rajpurkar

CXR-PRO is an adaptation of the MIMIC-CXR dataset (consisting of chest radiographs and their associated free-text radiology reports) with references to non-existent priors removed.

generation large language models free-text radiology reports references to priors retrieval

Published: Nov. 23, 2022. Version: 1.0.0

Database Credentialed Access

Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization

Yanjun Gao, John Caskey, Timothy Miller, Brihat Sharma, Matthew Churpek, Dmitriy Dligach, Majid Afshar

We introduce a hierarchical annotation suite of tasks addressing clinical text understanding, reasoning and abstraction over evidence, and diagnosis summarization. One task is section tagging major section and the other task is diagnosis generation.

Published: Sept. 30, 2022. Version: 1.0.0

Database Open Access

Haaglanden Medisch Centrum sleep staging database

Diego Alvarez-Estevez, Roselyne Rijsman

A collection of 151 whole-night PolySomnoGraphic (PSG) sleep recordings from the Haaglanden Medisch Centrum (HMC, The Netherlands) sleep center containing different traces of ExG activity and expert's scorings of sleep stages

edf inter-database generalization sleep staging psg deep learning

Published: March 18, 2022. Version: 1.1

Visualize waveforms

Database Credentialed Access

NCH Sleep DataBank: A Large Collection of Real-world Pediatric Sleep Studies with Longitudinal Clinical Data

Harlin Lee, Boyue Li, Yungui Huang, Yuejie Chi, Simon Lin

The NCH Sleep DataBank includes 3,984 pediatric sleep studies on 3,673 unique patients conducted at Nationwide Children's Hospital between 2017 and 2019. It contains polysomnography (PSG), clinical annotations, and longitudinal clinical data.

eeg ehr polysomnography pediatrics clinical decision support sleep disorders sleep study electronic health records ecg

Published: Oct. 27, 2021. Version: 3.1.0

Database Restricted Access

BigIdeasLab_STEP: Heart rate measurements captured by smartwatches for differing skin tones

Brinnae Bent, Jessilyn Dunn

Comparison of HR values reported by ECG (Bittium Faros) and wearables including Biovotion Everion, Empatica E4, Apple Watch, Garmin, Fitbit, and Xiaomi Miband.

wearables heart rate

Published: Feb. 10, 2021. Version: 1.0

Database Credentialed Access

Eye Gaze Data for Chest X-rays

Alexandros Karargyris, Satyananda Kashyap, Ismini Lourentzou, Joy Wu, Matthew Tong, Arjun Sharma, Shafiq Abedin, David Beymer, Vandana Mukherjee, Elizabeth Krupinski, Mehdi Moradi

This dataset was a collected using an eye tracking system while a radiologist interpreted and read 1,083 public CXR images. The dataset contains the following aligned modalities: image, transcribed report text, dictation audio and eye gaze data.

audio convolutional network heatmap eye tracking chest x-ray multimodal radiology machine learning explainability chest cxr deep learning

Published: Sept. 12, 2020. Version: 1.0.0

Database Open Access

Multilevel Monitoring of Activity and Sleep in Healthy People

Alessio Rossi, Eleonora Da Pozzo, Dario Menicagli, Chiara Tremolanti, Corrado Priami, Alina Sirbu, David Clifton, Claudia Martini, David Morelli

Multilevel Monitoring of Activity and Sleep in Healthy people (MMASH) dataset provides 24 hours of continuous beat-to-beat heart data, triaxal accelerometer data, sleep quality, physical activity, psychological characteristics and salivary samples.

sleep physiological response melatonin cortisol circadian rhythm psychological response saliva health

Published: June 19, 2020. Version: 1.0.0

Database Credentialed Access

Phenotype Annotations for Patient Notes in the MIMIC-III Database

Edward Moseley, Leo Anthony Celi, Joy Wu, Franck Dernoncourt

Clinical notes, annotated by at least two expert annotators for over ten patient phenotypes, including advanced cancer, substance abuse, and treatment non-adherence.

patient classification natural language processing

Published: March 5, 2020. Version: 1.20.03