Resources


Database Credentialed Access

Medication Extraction Labels for MIMIC-IV-Note Clinical Database

Akshay Goel, Almog Gueta, Omry Gilon, Sofia Erell, Amir Feder

Medication extraction NLP labels for 600 discharge summaries in MIMIC-IV-Note dataset.

Published: Dec. 12, 2023. Version: 1.0.0

Database Credentialed Access

Annotated MIMIC-IV discharge summaries for a study on deidentification of names

Shulammite Lim, Yuxin Xiao, Alistair Johnson, Dana Moukheiber, Lama Moukheiber, Mira Moukheiber, Marzyeh Ghassemi, Tom Pollard

Annotated MIMIC-IV discharge summaries used to explore deidentification of names

deidentification fairness

Published: July 5, 2023. Version: 1.0

Database Credentialed Access

MIMICEL: MIMIC-IV Event Log for Emergency Department

Jia Wei, Zhipeng He, Chun Ouyang, Catarina Moreira

MIMIC-IV Event Log for Emergency Department

Published: June 16, 2023. Version: 2.1.0

Database Credentialed Access

MS-CXR-T: Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing

Shruthi Bannur, Stephanie Hyland, Qianchu Liu, Fernando Pérez-García, Max Ilse, Daniel Coelho de Castro, Benedikt Boecking, Harshita Sharma, Kenza Bouzid, Anton Schwaighofer, Maria Teodora Wetscherek, Hannah Richardson, Tristan Naumann, Javier Alvarez Valle, Ozan Oktay

The MS-CXR-T is a multimodal benchmark that enhances the MIMIC-CXR v2 dataset by including expert-verified annotations. Its goal is to evaluate biomedical visual-language processing models in terms of temporal semantics extracted from image and text.

cxr disease progression vision-language processing multimodal radiology chest x-ray

Published: March 17, 2023. Version: 1.0.0

Database Credentialed Access

CXR-PRO: MIMIC-CXR with Prior References Omitted

Vignav Ramesh, Nathan Chi, Pranav Rajpurkar

CXR-PRO is an adaptation of the MIMIC-CXR dataset (consisting of chest radiographs and their associated free-text radiology reports) with references to non-existent priors removed.

generation free-text radiology reports references to priors retrieval large language models

Published: Nov. 23, 2022. Version: 1.0.0

Database Credentialed Access

Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization

Yanjun Gao, John Caskey, Timothy Miller, Brihat Sharma, Matthew Churpek, Dmitriy Dligach, Majid Afshar

We introduce a hierarchical annotation suite of tasks addressing clinical text understanding, reasoning and abstraction over evidence, and diagnosis summarization. One task is section tagging major section and the other task is diagnosis generation.

Published: Sept. 30, 2022. Version: 1.0.0

Database Open Access

Haaglanden Medisch Centrum sleep staging database

Diego Alvarez-Estevez, Roselyne Rijsman

A collection of 151 whole-night PolySomnoGraphic (PSG) sleep recordings from the Haaglanden Medisch Centrum (HMC, The Netherlands) sleep center containing different traces of ExG activity and expert's scorings of sleep stages

edf inter-database generalization sleep staging psg deep learning

Published: March 18, 2022. Version: 1.1

Visualize waveforms

Database Credentialed Access

NCH Sleep DataBank: A Large Collection of Real-world Pediatric Sleep Studies with Longitudinal Clinical Data

Harlin Lee, Boyue Li, Yungui Huang, Yuejie Chi, Simon Lin

The NCH Sleep DataBank includes 3,984 pediatric sleep studies on 3,673 unique patients conducted at Nationwide Children's Hospital between 2017 and 2019. It contains polysomnography (PSG), clinical annotations, and longitudinal clinical data.

eeg ehr polysomnography pediatrics clinical decision support sleep study ecg sleep disorders electronic health records

Published: Oct. 27, 2021. Version: 3.1.0

Database Restricted Access

BigIdeasLab_STEP: Heart rate measurements captured by smartwatches for differing skin tones

Brinnae Bent, Jessilyn Dunn

Comparison of HR values reported by ECG (Bittium Faros) and wearables including Biovotion Everion, Empatica E4, Apple Watch, Garmin, Fitbit, and Xiaomi Miband.

wearables heart rate

Published: Feb. 10, 2021. Version: 1.0

Database Credentialed Access

Eye Gaze Data for Chest X-rays

Alexandros Karargyris, Satyananda Kashyap, Ismini Lourentzou, Joy Wu, Matthew Tong, Arjun Sharma, Shafiq Abedin, David Beymer, Vandana Mukherjee, Elizabeth Krupinski, Mehdi Moradi

This dataset was a collected using an eye tracking system while a radiologist interpreted and read 1,083 public CXR images. The dataset contains the following aligned modalities: image, transcribed report text, dictation audio and eye gaze data.

audio convolutional network heatmap eye tracking explainability chest cxr multimodal radiology machine learning deep learning chest x-ray

Published: Sept. 12, 2020. Version: 1.0.0