Resources


Database Credentialed Access

Predictors of Hospital Onset Infection: A Matched Retrospective Cohort Dataset

Ziming Wei, Luke Sagers, Caroline McKenna, et al.

NPA-CP is a freely accessible dataset derived from electronic health record (EHR) information at MGB between 2015 and 2024. The dataset includes 11 different pathogens and can be used to predict hospital-onset infections for these pathogens.

infection control clinical machine learning infectious diseases hospital onset infection colonization pressure electronic health records

Published: Nov. 4, 2025. Version: 1.0.0

Database Restricted Access

In-hospital physical activity measured with a new Bosch accelerometer sensor system

Severin Schricker, Nico Schmid, Moritz Schanz, et al.

Measurements of physical activity with wrist-worn Bosch sensor platform to test predictive performance for the duration of hospitalization and readmission in 58 patients with acute illnesses in internal medicine

prediction acute illness hospitalization readmission accelerometer accelerometry

Published: Dec. 3, 2020. Version: 1.0

Database Credentialed Access

MIMIC-III-Ext-VeriFact-BHC: Labeled Propositions From Brief Hospital Course Summaries for Long-form Clinical Text Evaluation

Philip Chung, Akshay Swaminathan, Alex Goodell, et al.

A clinician-labeled dataset for fact-checking long-form clinical text against patient EHRs. The dataset contains LLM-written and human-written Brief Hospital Course summaries decomposed to atomic claim and sentence propositions with annotations.

natural language processing clinical informatics formal logic chart review clinical notes text embedding electronic health records artificial intelligence brief hospital course long-form text llm evaluation logical atomism retrieval-augmented generation text reranking clinical medicine atomic claim fact verification hybrid retrieval llm-as-a-judge large language models

Published: Aug. 27, 2026. Version: 1.1.0

Database Contributor Review

Medical Information Mart for Intensive Care Brazil (MIMIC-BR): a Brazilian Dataset of Anonymized Hospital and ICU Clinical Data

Gabriela Steil, Adhara Brandão Lima Vanhoz, Mateus de Lima Freitas, et al.

Medical Information Mart for Intensive Care Brazil (MIMIC-BR) is a Brazilian dataset of hospital and ICU adult patients anonymized data. It includes 31,789 admissions to the Einstein Hospital Israelita during a period of 3 years in the last 10 years

critical care dataset intensive care unit machine learning inpatients tertiary heatlhcare data anonymization artificial intelligence

Published: Aug. 9, 2026. Version: 1.0.1

Database Restricted Access

Hospitalized patients with heart failure: integrating electronic healthcare records and external outcome data

Zhongheng Zhang, Linghong Cao, Yan Zhao, et al.

The new version added beta blockers in the dat_md.csv file. Dataset comprising hospital-level data on patients who were admitted with heart failure to Zigong Fourth People’s Hospital, Sichuan, China between 2016 and 2019.

china electronic health record heart failure

Published: May 22, 2022. Version: 1.3

Challenge Credentialed Access

ArchEHR-QA: A Dataset for Addressing Patient's Information Needs related to Clinical Course of Hospitalization

Sarvesh Soni, Dina Demner-Fushman

A dataset for grounded question answering (QA) from electronic health records (EHRs).

question answering electronic health record patient portals clinicians

Published: Jan. 1, 2026. Version: 1.3

Database Credentialed Access

MIMIC-IV-Ext-BHC: Labeled Clinical Notes Dataset for Hospital Course Summarization

Asad Aali, Dave Van Veen, Yamin Arefeen, et al.

This dataset presents a collection of preprocessed and labeled clinical notes derived from "MIMIC-IV-Note", and aims to facilitate the development of ML models focused on summarizing brief hospital courses (BHC) from clinical notes.

natural language processing text summarization machine learning clinical notes brief hospital course

Published: Feb. 3, 2025. Version: 1.2.0

Database Credentialed Access

Critical care database comprising patients with infection at Zigong Fourth People's Hospital

Ping Xu, Lin Chen, Zhongheng Zhang

Routinely collected data from critical care units at Zigong Fourth People’s Hospital, Sichuan, China for patients admitted between January 2019 and December 2020 Missing information on temperature are updated in the new version.

Published: June 30, 2022. Version: 1.1

Database Credentialed Access

CLIP: A Dataset for Extracting Action Items for Physicians from Hospital Discharge Notes

James Mullenbach, Yada Pruksachatkun, Sean Adler, et al.

Clinical action items annotated over MIMIC-III. 718 discharge summaries are labeled at a sentence- and character-level with multiple action labels including Appointment, Lab, Procedure, Medication, Imaging, Patient Instructions, and Other.

Published: June 21, 2021. Version: 1.0.0

Database Open Access

St. Vincent's University Hospital / University College Dublin Sleep Apnea Database

Overnight polysomnograms with simultaneous three-channel Holter ECG, from 25 adult subjects with suspected sleep-disordered breathing.

polysomnogram sleep holter multiparameter ecg

Published: Oct. 9, 2007. Version: 1.0.0

Visualize waveforms