Resources


Model Credentialed Access

Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes

Eric Lehman, Sarthak Jain, Karl Pichotta, Yoav Goldberg, Byron Wallace

We explore recovering sensitive info from BERT trained over non-deidentified EHR. We make our models and data available to further facilitate research.

Published: April 28, 2021. Version: 1.0.0


Database Credentialed Access

AMR-UTI: Antimicrobial Resistance in Urinary Tract Infections

Michael Oberst, Soorajnath Boominathan, Helen Zhou, Sanjat Kanjilal, David Sontag

AMR-UTI is a freely accessible dataset, derived from electronic health record (EHR) information on over 100,000 urinary tract infections (UTI) treated at Massachusetts General Hospital and Brigham & Women's Hospital in Boston, MA, USA.

antibiotic resistance causal inference policy learning antimicrobial resistance urinary tract infection clinical decision support machine learning

Published: Nov. 4, 2020. Version: 1.0.0


Challenge Open Access

Predicting Mortality of ICU Patients: The PhysioNet/Computing in Cardiology Challenge 2012

The focus of the PhysioNet/CinC Challenge 2012 is to develop methods for patient-specific prediction of in-hospital mortality. Participants will use information collected during the first two days of an ICU stay to predict which patients survive the…

mortality prediction ehr challenge mimic

Published: Jan. 20, 2012. Version: 1.0.0


Database Credentialed Access

MIMIC-II Clinical Database

Mohammed Saeed, Mauricio Villarroel, Andrew Reisner, Gari Clifford, Li-wei Lehman, George Moody, Thomas Heldt, Tin Kyaw, Benjamin Moody, Roger Mark

Electronic health record data collected from >30,000 patients admitted to ICUs at a single tertiary care hospital.

ehr icu mimic-ii bidmc

Published: April 24, 2011. Version: 2.6.0


Challenge Open Access

Predicting Acute Hypotensive Episodes: The PhysioNet/Computing in Cardiology Challenge 2009

This year's challenge is the tenth in the annual series of open challenges hosted by PhysioNet in cooperation with Computers in Cardiology. The goal of the challenge is to predict which patients in the challenge dataset will experience an acute …

hypertension multiparameter ehr challenge mimic

Published: Jan. 27, 2009. Version: 1.0.0


Database Open Access

MIMIC Database

The MIMIC Database includes data recorded from over 90 ICU patients. The data in each case include signals and periodic measurements obtained from a bedside monitor as well as clinical data obtained from the patient's medical record. The recordi…

health record ehr icu critical care mimic

Published: March 15, 2000. Version: 1.0.0

Visualize waveforms

Challenge Open Access

Predicting Mortality of ICU Patients: The PhysioNet/Computing in Cardiology Challenge 2012

The focus of the PhysioNet/CinC Challenge 2012 is to develop methods for patient-specific prediction of in-hospital mortality. Participants will use information collected during the first two days of an ICU stay to predict which patients survive the…

mortality prediction ehr challenge mimic

Published: Jan. 20, 2012. Version: 1.0.0


Database Credentialed Access

MIMIC-II Clinical Database

Mohammed Saeed, Mauricio Villarroel, Andrew Reisner, Gari Clifford, Li-wei Lehman, George Moody, Thomas Heldt, Tin Kyaw, Benjamin Moody, Roger Mark

Electronic health record data collected from >30,000 patients admitted to ICUs at a single tertiary care hospital.

ehr icu mimic-ii bidmc

Published: April 24, 2011. Version: 2.6.0


Challenge Open Access

Predicting Acute Hypotensive Episodes: The PhysioNet/Computing in Cardiology Challenge 2009

This year's challenge is the tenth in the annual series of open challenges hosted by PhysioNet in cooperation with Computers in Cardiology. The goal of the challenge is to predict which patients in the challenge dataset will experience an acute …

hypertension multiparameter ehr challenge mimic

Published: Jan. 27, 2009. Version: 1.0.0


Database Open Access

MIMIC Database

The MIMIC Database includes data recorded from over 90 ICU patients. The data in each case include signals and periodic measurements obtained from a bedside monitor as well as clinical data obtained from the patient's medical record. The recordi…

health record ehr icu critical care mimic

Published: March 15, 2000. Version: 1.0.0

Visualize waveforms