Resources


Database Credentialed Access

AMR-UTI: Antimicrobial Resistance in Urinary Tract Infections

Michael Oberst, Soorajnath Boominathan, Helen Zhou, Sanjat Kanjilal, David Sontag

AMR-UTI is a freely accessible dataset, derived from electronic health record (EHR) information on over 100,000 urinary tract infections (UTI) treated at Massachusetts General Hospital and Brigham & Women's Hospital in Boston, MA, USA.

antibiotic resistance causal inference policy learning antimicrobial resistance urinary tract infection clinical decision support machine learning

Published: Nov. 4, 2020. Version: 1.0.0

Database Credentialed Access

MIMIC-III - SequenceExamples for TensorFlow modeling

Jonas Kemp, Kun Zhang, Andrew Dai

MIMIC-III data converted into TensorFlow SequenceExample format, for use in modeling pipelines.

tensorflow sequence modeling machine learning deep learning

Published: Sept. 29, 2020. Version: 1.0.0

Database Credentialed Access

Phenotype Annotations for Patient Notes in the MIMIC-III Database

Edward Moseley, Leo Anthony Celi, Joy Wu, Franck Dernoncourt

Clinical notes, annotated by at least two expert annotators for over ten patient phenotypes, including advanced cancer, substance abuse, and treatment non-adherence.

patient classification natural language processing

Published: March 5, 2020. Version: 1.20.03

Model Credentialed Access

What's in a Note? Unpacking Predictive Value in Clinical Note Representations

Tristan Naumann, William Boag

Word vectors corresponding to the AMIA 2018 Informatics Summit paper of the same name.

Published: Jan. 7, 2018. Version: 0.1

Database Open Access

Clinical data from the MIMIC-II database for a case study on indwelling arterial catheters

Jesse Raffa

Dataset extracted from MIMIC-II for a tutorial on effectiveness of indwelling arterial catheters in hemodynamically stable patients with respiratory failure for mortality outcomes.

Published: Oct. 28, 2016. Version: 1.0

Software Open Access

De-Identification Software Package

The deid software package includes code and dictionaries for automated location and removal of protected health information (PHI) in free text from medical records.

phi deidentification anonymization

Published: Dec. 18, 2007. Version: 1.1

Database Credentialed Access

MIMIC-Ext-MIMIC-CXR-VQA: A Complex, Diverse, And Large-Scale Visual Question Answering Dataset for Chest X-ray Images

Seongsu Bae, Daeun Kyung, Jaehee Ryu, Eunbyeol Cho, Gyubok Lee, Sunjun Kweon, Jungwoo Oh, Lei JI, Eric Chang, Tackeun Kim, Edward Choi

We introduce MIMIC-Ext-MIMIC-CXR-VQA, a complex, diverse, and large-scale dataset designed for Visual Question Answering (VQA) tasks within the medical domain, focusing primarily on chest radiographs.

question answering chest x-ray electronic health records radiology machine learning multimodal deep learning evaluation visual question answering benchmark

Published: July 19, 2024. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-ED

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Leo Anthony Celi, Roger Mark, Steven Horng

A large database of emergency department admissions.

emergency department ed emergency mimic-iv electronic health record mimic

Published: Jan. 5, 2023. Version: 2.2

Database Restricted Access

Hospitalized patients with heart failure: integrating electronic healthcare records and external outcome data

Zhongheng Zhang, Linghong Cao, Yan Zhao, Ziyin Xu, Rangui Chen, Lukai Lv, Ping Xu

The new version added beta blockers in the dat_md.csv file. Dataset comprising hospital-level data on patients who were admitted with heart failure to Zigong Fourth People’s Hospital, Sichuan, China between 2016 and 2019.

china heart failure electronic health record

Published: May 22, 2022. Version: 1.3

Database Open Access

MIMIC Database

The MIMIC Database includes data recorded from over 90 ICU patients. The data in each case include signals and periodic measurements obtained from a bedside monitor as well as clinical data obtained from the patient's medical record. The recordi…

health record icu ehr critical care mimic

Published: March 15, 2000. Version: 1.0.0

Visualize waveforms