Resources
Database Credentialed Access
Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization
Yanjun Gao, John Caskey, Timothy Miller, Brihat Sharma, Matthew Churpek, Dmitriy Dligach, Majid Afshar
Published: Sept. 30, 2022. Version: 1.0.0
Database Credentialed Access
Learning to Ask Like a Physician: a Discharge Summary Clinical Questions (DiSCQ) Dataset
Eric Lehman
question generation question answering machine learning
Published: July 28, 2022. Version: 1.0
Model Credentialed Access
Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes
Eric Lehman, Sarthak Jain, Karl Pichotta, Yoav Goldberg, Byron Wallace
Published: April 28, 2021. Version: 1.0.0
Database Credentialed Access
AMR-UTI: Antimicrobial Resistance in Urinary Tract Infections
Michael Oberst, Soorajnath Boominathan, Helen Zhou, Sanjat Kanjilal, David Sontag
antibiotic resistance causal inference policy learning antimicrobial resistance urinary tract infection clinical decision support machine learning
Published: Nov. 4, 2020. Version: 1.0.0
Database Credentialed Access
MIMIC-III - SequenceExamples for TensorFlow modeling
Jonas Kemp, Kun Zhang, Andrew Dai
tensorflow sequence modeling machine learning deep learning
Published: Sept. 29, 2020. Version: 1.0.0
Database Credentialed Access
Phenotype Annotations for Patient Notes in the MIMIC-III Database
Edward Moseley, Leo Anthony Celi, Joy Wu, Franck Dernoncourt
patient classification natural language processing
Published: March 5, 2020. Version: 1.20.03
Model Credentialed Access
What's in a Note? Unpacking Predictive Value in Clinical Note Representations
Tristan Naumann, William Boag
Published: Jan. 7, 2018. Version: 0.1
Database Open Access
Clinical data from the MIMIC-II database for a case study on indwelling arterial catheters
Jesse Raffa
Published: Oct. 28, 2016. Version: 1.0
Software Open Access
De-Identification Software Package
The deid
software package includes code and dictionaries for automated location and removal of protected health information (PHI) in free text from medical records.
phi deidentification anonymization
Published: Dec. 18, 2007. Version: 1.1
Database Credentialed Access
MIMIC-Ext-MIMIC-CXR-VQA: A Complex, Diverse, And Large-Scale Visual Question Answering Dataset for Chest X-ray Images
Seongsu Bae, Daeun Kyung, Jaehee Ryu, Eunbyeol Cho, Gyubok Lee, Sunjun Kweon, Jungwoo Oh, Lei JI, Eric Chang, Tackeun Kim, Edward Choi
question answering multimodal radiology machine learning evaluation visual question answering electronic health records benchmark deep learning chest x-ray
Published: July 19, 2024. Version: 1.0.0