Resources
37 results for "clinical information extraction"
Database
Credentialed Access
RadCoref: Fine-tuning coreference resolution for different styles of clinical narratives
RadCoref is a small subset of MIMIC-CXR with manually annotated coreference mentions and clusters. The dataset is annotated by a panel of three cross-disciplinary experts with experience in clinical data processing following the i2b2 annotation sche…
Database
Credentialed Access
MIMIC-III-Ext-VeriFact-BHC: Labeled Propositions From Brief Hospital Course Summaries for Long-form Clinical Text Evaluation
The VeriFact-BHC dataset is designed to verify the factuality of long-form text written about a patient against their own electronic health record. There is increasing interest in using large language models (LLMs) to generate clinical text in patie…
natural language processing
clinical informatics
formal logic
chart review
text embedding
brief hospital course
long-form text
logical atomism
retrieval-augmented generation
text reranking
clinical medicine
atomic claim
fact verification
hybrid retrieval
llm-as-a-judge
llm evaluation
clinical notes
large language models
electronic health records
artificial intelligence
Database
Credentialed Access
Curated Data for Describing Blood Glucose Management in the Intensive Care Unit
Analysis of real-world glucose and insulin clinical data recorded in electronic health records can provide insights into tailored approaches to clinical care, but still present many analytic challenges. The present data subsets are the result of a d…
Database
Credentialed Access
CAD-Chest: Comprehensive Annotation of Diseases based on MIMIC-CXR Radiology Report
Several extant chest X-ray (CXR) datasets predominantly comprise binary disease labels and exhibit a deficiency in providing comprehensive disease-related information. Crucial facets of disease management, including disease severity, diagnostic unce…
Model
Credentialed Access
Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes
This project contains the weights of 7 different BERT models trained over a surrogate re-identified set of MIMIC-III (v1.4) notes. Each model is suitable for direct compatibility with the HuggingFace framework; users can easily load and apply the mo…
Database
Credentialed Access
MIMIC-IV-Ext clinical decision support for referral, triage and diagnosis
Accurate medical decision-making is critical for both patients and clinicians. Patients often find it difficult to interpret their symptoms, determine their severity, and select the right specialist to see. At the same time, clinicians face challeng…
Database
Credentialed Access
Lunguage: A Benchmark for Structured and Sequential Chest X-ray Interpretation
Radiology reports convey detailed clinical observations and capture diagnostic reasoning that evolves over time. However, existing evaluation methods are limited to single-report settings and rely on coarse metrics that fail to capture fine-grained …
fine-grained structured reports
attribute-level clinical reasoning
medical text structuring
longitudinal clinical reasoning
chest x-ray report parsing
medical information structuring
benchmark dataset for radiology report
medical information extraction
structured radiology reports
temporal relation extraction
radiology report benchmarking
longitudinal clinical understanding