Resources


Database Restricted Access

Flatten: COVID-19 Survey Data on Symptoms, Demographics and Mental Health in Canada

Shrey Jain, Marie Charpignon, Mathew Samuel, Jaydeep Mistry, Nicholas Frosst, Leo Anthony Celi, Marzyeh Ghassemi

Freely accessible COVID-19 symptom dataset surveying Canadians and gathered from March to July of 2020 by the global humanitarian aid non-profit Flatten. This dataset of 294,106 surveys gathered from March 23rd to July 30th in 2020.

public health population statistics covid-19

Published: March 8, 2021. Version: 1.0

Database Open Access

Sleep Heart Health Study PSG Database

Data collected for a prospective cohort study designed to investigate the relationship between sleep disordered breathing and cardiovascular disease.

polysomnogram sleep multiparameter

Published: Oct. 23, 2003. Version: 1.0.0

Visualize waveforms

Database Contributor Review

CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools

Eulalia Farre Maduell, Salvador Lima-Lopez, Santiago Andres Frid, Artur Conesa, Elisa Asensio, Antonio Lopez-Rueda, Helena Arino, Elena Calvo, Maria Jesús Bertran, Maria Angeles Marcos, Montserrat Nofre Maiz, Laura Tañá Velasco, Antonia Marti, Ricardo Farreres, Xavier Pastor, Xavier Borrat Frigola, Martin Krallinger

CARMEN-I is a Spanish corpus of 2,000 clinical records from Hospital Clínic, Barcelona. It covers COVID-19 patients and comorbidities, serving as a resource for training clinical NLP models and researchers in NLP applied to clinical documents.

de-identification clinical ner anonymization

Published: April 20, 2024. Version: 1.0.1

Database Open Access

Smart Health for Assessing the Risk of Events via ECG Database

Holter recordings of 139 hypertensive patients recruited at the Centre of Hypertension of the University Hospital of Naples Federico II.

risk hypertension holter hrv ecg

Published: May 19, 2015. Version: 1.0.0

Visualize waveforms

Challenge Open Access

Heart Murmur Detection from Phonocardiogram Recordings: The George B. Moody PhysioNet Challenge 2022

Matthew Reyna, Yashar Kiarashi, Andoni Elola, Jorge Oliveira, Francesco Renna, Annie Gu, Erick Andres Perez Alday, Nadi Sadr, Sandra Mattos, Miguel Coimbra, Reza Sameni, Ali Bahrami Rad, Zuzana Koscova, Gari Clifford

2022 Physionet Challenge is devoted to detecting the presence or absence of murmurs from multiple heart sound recordings from multiple auscultation locations, as well as detecting the clinical outcomes.

challenge competition cardiac auscultation congenital heart diseases

Published: Sept. 28, 2023. Version: 1.0.0

Database Credentialed Access

MIMIC-III-Ext-VeriFact-BHC: Labeled Propositions From Brief Hospital Course Summaries for Long-form Clinical Text Evaluation

Philip Chung, Akshay Swaminathan, Alex Goodell, Yeasul Kim, Momsen Reincke, Lichy Han, Ben Deverett, Mohammad Amin Sadeghi, Abdel badih El Ariss, Marc Ghanem, David Seong, Andrew Lee, Caitlin Coombes, Brad Bradshaw, Mahir Sufian, Hyo Jung Hong, Teresa Nguyen, Mohammad Rasouli, Komal Kamra, Mark Burbridge, James McAvoy, Roya Saffary, Stephen Parnell Ma, Dev Dash, James Xie, Ellen Wang, Cliff Schmiesing, Nigam Shah, Nima Aghaeepour

A clinician-labeled dataset for fact-checking long-form clinical text against patient EHRs. The dataset contains LLM-written and human-written Brief Hospital Course summaries decomposed to atomic claim and sentence propositions with annotations.

artificial intelligence natural language processing clinical notes electronic health records large language models brief hospital course long-form text chart review text reranking atomic claim hybrid retrieval clinical informatics clinical medicine fact verification retrieval-augmented generation logical atomism text embedding formal logic llm-as-a-judge llm evaluation

Published: April 9, 2025. Version: 1.0.0

Database Credentialed Access

BOLD, a blood-gas and oximetry linked dataset

João Matos, Tristan Struja, Jack Gallifant, Luis Filipe Nakayama, Marie Charpignon, Xiaoli Liu, Jaime dos Santos Cardoso, Leo Anthony Celi, An Kwok Wong

An open-source pulse oximetry and arterial blood gas dataset, derived from MIMIC-III, MIMIC-IV, and eICU-CRD

pulse oximetry intensive care unit health equity electronic health records

Published: Nov. 8, 2023. Version: 1.0

Database Credentialed Access

GLOBEM Dataset: Multi-Year Datasets for Longitudinal Human Behavior Modeling Generalization

Xuhai Xu, Han Zhang, Yasaman Sefidgar, Yiyi Ren, Xin Liu, Woosuk Seo, Jennifer Brown, Kevin Kuehn, Mike Merrill, Paula Nurius, Shwetak Patel, Tim Althoff, Margaret Morris, Eve Riskin, Jennifer Mankoff, Anind Dey

GLOBEM datasets contain the first released multi-year mobile and wearable sensing datasets from 2018 to 2021, containing 705 person-years and 497 unique participants.

health ubiquitous computing well-being passive mobile sensing human behavior modeling

Published: March 14, 2023. Version: 1.1

Database Credentialed Access

MIMIC-IV-Note: Deidentified free-text clinical notes

Alistair Johnson, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

Deidentified free-text clinical notes for patients in the MIMIC-IV Clinical Database.

deidentification critical care electronic health record natural language processing clinical notes mimic

Published: Jan. 6, 2023. Version: 2.2

Database Credentialed Access

NCH Sleep DataBank: A Large Collection of Real-world Pediatric Sleep Studies with Longitudinal Clinical Data

Harlin Lee, Boyue Li, Yungui Huang, Yuejie Chi, Simon Lin

The NCH Sleep DataBank includes 3,984 pediatric sleep studies on 3,673 unique patients conducted at Nationwide Children's Hospital between 2017 and 2019. It contains polysomnography (PSG), clinical annotations, and longitudinal clinical data.

eeg ehr pediatrics polysomnography clinical decision support sleep study ecg electronic health records sleep disorders

Published: Oct. 27, 2021. Version: 3.1.0