Resources


Database Credentialed Access

MIMIC-IV-Ext-BHC: Labeled Clinical Notes Dataset for Hospital Course Summarization

Asad Aali, Dave Van Veen, Yamin Arefeen, Jason Hom, Christian Bluethgen, Eduardo Pontes Reis, Sergios Gatidis, Namuun Clifford, Joseph Daws, Arash Tehrani, Jangwon Kim, Akshay Chaudhari

This dataset presents a collection of preprocessed and labeled clinical notes derived from "MIMIC-IV-Note", and aims to facilitate the development of ML models focused on summarizing brief hospital courses (BHC) from clinical notes.

natural language processing clinical notes machine learning brief hospital course text summarization

Published: Feb. 3, 2025. Version: 1.2.0

Database Credentialed Access

MIMIC-III and eICU-CRD: Feature Representation by FIDDLE Preprocessing

Shengpu Tang, Parmida Davarmanesh, Yanmeng Song, Danai Koutra, Michael Sjoding, Jenna Wiens

Features and labels from MIMIC-III and eICU-CRD produced by FIDDLE, an EHR preprocessing pipeline.

preprocessing electronic health record machine learning

Published: April 28, 2021. Version: 1.0.0

Database Restricted Access

TN-Mammo: A Multi-view Mammography Dataset for Breast Density Classification

Binh Nguyen, Cat Le, Loc Vu, Quynh Nguyen, Ha-Hieu Pham, Phuong Anh Vu, Thuan Huynh, Cao Tien Dung, Nghiem Diep Tuong, Byung-Woo Hong

We release the first version of TN-Mammo (June 2024), a mammogram dataset of 676 cases with breast density labels, providing high-quality data to support machine learning and early breast cancer detection.

Published: Oct. 4, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-III-Ext-tPatchGNN

Chenlong Yin, Weijia Zhang

The processed MIMIC-III dataset for the benchmark of Irregular Multivariate Time Series Forecasting: A Transformable Patching Graph Neural Networks Approach.

Published: April 9, 2025. Version: 1.0.0

Database Credentialed Access

SCRIPT X2B8 Dataset: per-day clinical features to model successful next-day extubation

Sam Fenske, Alec Peltekian, Mengjia Kang, Nikolay Markov, Anna Pawlowski, Luke Rasmussen, Thomas Stoeger, Benjamin Singer, GR Scott Budinger, Richard Wunderink, Alexander Misharin, Ankit Agrawal, Catherine A Gao

This dataset contains electronic health record (EHR) data from ICU patients receiving mechanical ventilation, aggregated on a daily basis, along with annotations of intubation, extubation, tracheostomy days, and cases of failed extubation. Data can b

Published: Jan. 28, 2025. Version: 1.0.0

Database Open Access

A large scale 12-lead electrocardiogram database for arrhythmia study

Jianwei Zheng, Hangyuan Guo, Huimin Chu

A 12-lead electrocardiogram database for arrhythmia research covering more than 10,000 patients

Published: Aug. 24, 2022. Version: 1.0.0

Visualize waveforms

Database Open Access

Brain Hemorrhage Extended (BHX): Bounding box extrapolation from thick to thin slice CT images

Eduardo Pontes Reis, Felipe Nascimento, Mateus Aranha, Fernando Mainetti Secol, Birajara Machado, Marcelo Felix, Anouk Stein, Edson Amaro

The first version of this dataset was made available in the forum of Kaggle competition 'RSNA Intracranial Hemorrhage Detection' (v1.0). Then minor corrections were implemented (v1.1).

hemorrhage intracranial

Published: July 29, 2020. Version: 1.1

Database Credentialed Access

Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries

Melissa Poulsen, Vanessa Troiani, Philip Freda, Danielle Mowery, Anahita Davoudi

The database contains a corpus of annotated data from the MIMIC-III Critical Care Database from a study that aimed to develop and apply an annotation schema to characterize opioid use disorder and related contextual factors.

opioid use disorder substance use natural language processing clinical notes

Published: Feb. 8, 2023. Version: 1.0.0

Database Credentialed Access

Eye Gaze Data for Chest X-rays

Alexandros Karargyris, Satyananda Kashyap, Ismini Lourentzou, Joy Wu, Matthew Tong, Arjun Sharma, Shafiq Abedin, David Beymer, Vandana Mukherjee, Elizabeth Krupinski, Mehdi Moradi

This dataset was a collected using an eye tracking system while a radiologist interpreted and read 1,083 public CXR images. The dataset contains the following aligned modalities: image, transcribed report text, dictation audio and eye gaze data.

convolutional network heatmap eye tracking explainability audio chest cxr machine learning chest x-ray radiology multimodal deep learning

Published: Sept. 12, 2020. Version: 1.0.0

Database Credentialed Access

Synthetic Acute Hypotension and Sepsis Datasets Based on MIMIC-III and Published as Part of the Health Gym Project

Nicholas Kuo, Simon Finfer, Louisa Jorm, Sebastiano Barbieri

This repository hosts the original Health Gym datasets of Acute Hypotension and Sepsis

sepsis acute hypotension synthetic dataset generative modelling wasserstein generative adversarial network reinforcement learning machine learning

Published: Feb. 23, 2022. Version: 1.0.0