Resources


Database Credentialed Access

RadCoref: Fine-tuning coreference resolution for different styles of clinical narratives

Yuxiang Liao, Hantao Liu, Irena Spasic

RadCoref is a small subset of MIMIC-CXR with manually annotated coreference mentions and clusters. Based on the annotated data, we fine-tuned a deep neural model and used it to annotate the whole MIMIC-CXR dataset. Both data are available.

coreference resolution natural language processing radiology

Published: Jan. 30, 2024. Version: 1.0.0

Database Contributor Review

BIDMC Metabolomic Cohort of Adults with Biopsy-Proven MASLD

Valeria Gutierrez de Piñeres, Claudia S Tamayo-Torres, Christos Mantzoros

De-identified serum metabolomics from an Australian cohort of adults with and without biopsy-proven MASLD. Includes 1,618 targeted metabolomic features quantified by UPLC-MS/MS (Metabolon Inc.).

Published: Aug. 9, 2026. Version: 1.0.0

Database Credentialed Access

LLaVA-Rad MIMIC-CXR Annotations

Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, et al.

This dataset provides GPT-4 extracted sections of radiology reports from MIMIC-CXR, complementing rule-based section extractions with additional reports with findings, and removing references to priors from findings.

Published: Jan. 24, 2025. Version: 1.0.0

Database Restricted Access

Microbiological, Immunological and Biochemical Characteristics of the Development of Ventilator Associated Pneumonia

Natalia Sanabria-Herrera, Ingrid Gisell Bustos Moya, Luis Felipe Reyes

This study explores the respiratory microbiome's role in nosocomial lower respiratory tract infections in ICU patients. Conducted in Chía, Colombia, revealing the microbiome's impact on disease progression.

Published: Dec. 5, 2025. Version: 1.1.1

Database Credentialed Access

MIMIC-IV-Ext clinical decision support for referral, triage and diagnosis

Farieda Gaber, Altuna Akalin

This MIMIC-IV extended dataset is designed to evaluate and improve LLMs' ability to assist with triage, specialist referral, and diagnosis, using critical patient information such as history of present illness,vitals signs and other relevant data.

Published: Oct. 8, 2025. Version: 1.0.2

Database Credentialed Access

EchoNotes Structured Database derived from MIMIC-III (ECHO-NOTE2NUM)

Gloria Hyunjung Kwak, Dana Moukheiber, Mira Moukheiber, et al.

A structured echocardiogram database derived from 43,472 observational notes obtained during echocardiogram studies conducted in the intensive care unit at the Beth Israel Deaconess Medical Center between 2001 and 2012.

Published: Feb. 23, 2024. Version: 1.0.0

Database Credentialed Access

Critical care database comprising patients with infection at Zigong Fourth People's Hospital

Ping Xu, Lin Chen, Zhongheng Zhang

Routinely collected data from critical care units at Zigong Fourth People’s Hospital, Sichuan, China for patients admitted between January 2019 and December 2020 Missing information on temperature are updated in the new version.

Published: June 30, 2022. Version: 1.1

Challenge Credentialed Access

CXR-LT: Multi-Label Long-Tailed Classification on Chest X-Rays

Gregory Holste, Mingquan Lin, Song Wang, et al.

CXR-LT 2024 was a challenge for long-tailed, multi-label, and zero-shot thorax disease classification on chest X-rays, held at MICCAI 2024. This page contains long-tailed labels for 45 diseases from the CXR-LT 2024 and 2023 challenges.

disease classification chest x-ray long-tailed learning cardiopulmonary disease zero-shot learning computer-aided diagnosis artificial intelligence deep learning

Published: March 19, 2025. Version: 2.0.0

Database Credentialed Access

RadGraph2: Tracking Findings Over Time in Radiology Reports

Adam Dejl, Sameer Khanna, Patricia Therese Pile, et al.

RadGraph2 is a dataset of 800 chest radiology reports annotated using a fine-grained entity-relationship schema, which captures key findings as well as mentions of changes that occurred in comparison with the previous radiology studies.

relation extraction chest x-rays disease progression information extraction radiology reports named entity recognition

Published: Aug. 8, 2024. Version: 1.0.0

Database Restricted Access

VinDr-SpineXR: A large annotated medical image dataset for spinal lesions detection and classification from radiographs

Hieu Huy Pham, Hieu Nguyen Trung, Ha Quy Nguyen

VinDr-SpineXR: A large annotated medical image dataset for spinal lesions detection and classification from radiographs

Published: Aug. 24, 2021. Version: 1.0.0