Resources
Database Contributor Review
CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools
Eulalia Farre Maduell, Salvador Lima-Lopez, Santiago Andres Frid, Artur Conesa, Elisa Asensio, Antonio Lopez-Rueda, Helena Arino, Elena Calvo, Maria Jesús Bertran, Maria Angeles Marcos, Montserrat Nofre Maiz, Laura Tañá Velasco, Antonia Marti, Ricardo Farreres, Xavier Pastor, Xavier Borrat Frigola, Martin Krallinger
de-identification clinical ner anonymization
Published: April 20, 2024. Version: 1.0.1
Database Credentialed Access
ODD: A Benchmark Dataset for the NLP-based Opioid Related Aberrant Behavior Detection
Sunjae Kwon, Xun Wang, Weisong Liu, Emily Druhl, Minhee Sung, Joel Reisman, Wenjun Li, Robert Kerns, William Becker, Hong Yu
natural language processing substance use opioid related aberrant behavior
Published: Jan. 11, 2024. Version: 1.0.0
Database Credentialed Access
Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization
Yanjun Gao, John Caskey, Timothy Miller, Brihat Sharma, Matthew Churpek, Dmitriy Dligach, Majid Afshar
Published: Sept. 30, 2022. Version: 1.0.0
Challenge Credentialed Access
Analysis of Clinical Text: Task 14 of SemEval 2015
Guergana Savova
Published: Dec. 28, 2014. Version: 2.0
Database Credentialed Access
MIMIC-IV-Note: Deidentified free-text clinical notes
Alistair Johnson, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark
deidentification mimic critical care natural language processing clinical notes electronic health record
Published: Jan. 6, 2023. Version: 2.2
Model Credentialed Access
EntityBERT: BERT-based Models Pretrained on MIMIC-III with or without Entity-centric Masking Strategy for the Clinical Domain
Chen Lin, Steven Bethard, Guergana Savova, Timothy Miller, Dmitriy Dligach
Published: March 17, 2022. Version: 1.0.1
Challenge Credentialed Access
Analysis of Clinical Text: Task 14 of SemEval 2015
Guergana Savova
Published: Dec. 28, 2014. Version: 2.0
Database Credentialed Access
Medication Extraction Labels for MIMIC-IV-Note Clinical Database
Akshay Goel, Almog Gueta, Omry Gilon, Sofia Erell, Amir Feder
Published: Dec. 12, 2023. Version: 1.0.0
Challenge Credentialed Access
BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization
Yanjun Gao, Dmitriy Dligach, Timothy Miller, Majid Afshar
bionlp clinical natural language processing electronic health record summarization
Published: Nov. 12, 2023. Version: 2.0.0
Model Credentialed Access
Characterization of Stigmatizing Language in Medical Records
Keith Harrigian, Ayah Zirikly, Brant Chee, Alya Ahmad, Anne Links, Somnath Saha, Mary Catherine Beach, Mark Dredze
mimic clinical natural language processing large language models domain transfer bias stigmatizing language
Published: Nov. 6, 2023. Version: 1.0.0