Resources


Software Open Access

record - An application for capturing data from an HP CMS (Merlin) monitor

record is an MS-DOS application that determines what signals and measurements are available from a Hewlett-Packard (Agilent/Philips) Merlin (a.k.a. CMS or Component Monitoring System) patient monitor, and then logs all of the available data to disk …

monitor mimic

Published: June 9, 2003. Version: 1.0.0

Database Credentialed Access

MS-CXR: Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing

Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez Valle, Hoifung Poon, Ozan Oktay

MS-CXR is a new dataset containing 1162 Chest X-ray bounding box labels paired with radiology text descriptions, annotated and verified by two board-certified radiologists.

chest x-ray vision-language processing

Published: May 16, 2022. Version: 0.1

Database Credentialed Access

DrugEHRQA: A Question Answering Dataset on Structured and Unstructured Electronic Health Records For Medicine Related Queries

Jayetri Bardhan, Anthony Colas, Kirk Roberts, Daisy Zhe Wang

DrugEHRQA is a QA dataset containing question-answers from MIMIC-III tables and discharge summaries.

question-answer qa

Published: April 12, 2022. Version: 1.0.0

Database Credentialed Access

MedNLI - A Natural Language Inference Dataset For The Clinical Domain

Chaitanya Shivade

This is a resource for training machine learning models for language inference in the medical domain.

natural language inference recognizing textual entailment

Published: Oct. 1, 2019. Version: 1.0.0

Software Open Access

Cardiac Output Estimation from Arterial Blood Pressure Waveforms

This project contains the code used for a study that rigorously compares 11 estimates against thermodilution cardiac output (TCO) using 120 subjects from the MIMIC II database (all subjects for whom multiple TCO measurements were recorded at the tim…

cardiac output estimation

Published: Aug. 2, 2007. Version: 1.0.0

Database Restricted Access

MIMIC-Eye: Integrating MIMIC Datasets with REFLACX and Eye Gaze for Multimodal Deep Learning Applications

Chihcheng Hsieh, Chun Ouyang, Jacinto C Nascimento, Joao Pereira, Joaquim Jorge, Catarina Moreira

MIMIC-Eye: Integrating MIMIC Datasets with REFLACX and Eye Gaze for Multimodal Deep Learning Applications

Published: March 23, 2023. Version: 1.0.0

Database Credentialed Access

MIMICEL: MIMIC-IV Event Log for Emergency Department

Jia Wei, Zhipeng He, Chun Ouyang, Catarina Moreira

MIMIC-IV Event Log for Emergency Department

Published: March 6, 2023. Version: 2.0.0

Database Credentialed Access

Generalized Image Embeddings for the MIMIC Chest X-Ray dataset

Andrew Sellergren, Atilla Kiraly, Tom Pollard, Wei-Hung Weng, Yun Liu, Akib Uddin, Christina Chen

This database contains compact information-rich embeddings of the MIMIC-CXR Database v2.0.0 using the CXR Foundation API v1.0.

Published: Feb. 22, 2023. Version: 1.0

Database Credentialed Access

MIMIC-IV-ECG - Diagnostic Electrocardiogram Matched Subset

Brian Gow, Tom Pollard, Larry A Nathanson, Alistair Johnson, Benjamin Moody, Chrystinne Fernandes, Nathaniel Greenbaum, Seth Berkowitz, Dana Moukheiber, Parastou Eslami, Elizabeth Herbst, Roger Mark, Steven Horng

The MIMIC-IV ECG module contains approximately 800,000 diagnostic electrocardiograms across nearly 160,000 unique patients. These patients overlap with the patients from the MIMIC-IV Clinical Database.

Published: Feb. 8, 2023. Version: 0.2

Model Credentialed Access

Clinical-T5: Large Language Models Built Using MIMIC Clinical Text

Eric Lehman, Alistair Johnson

We train a T5-Base and T5-Large from scratch on MIMIC-III and MIMIC-IV. Additionally, we further pretrain T5-Base and SciFive on notes from MIMIC. We release these model weights on PhysioNet.

Published: Jan. 25, 2023. Version: 1.0.0