Resources


Database Restricted Access

REFLACX: Reports and eye-tracking data for localization of abnormalities in chest x-rays

Ricardo Bigolin Lanfredi, Mingyuan Zhang, William Auffermann, Jessica Chan, Phuong-Anh Duong, Vivek Srikumar, Trafton Drew, Joyce Schroeder, Tolga Tasdizen

This dataset contains 3032 cases of eye-tracking data collected while five radiologists dictated reports for frontal chest x-rays, synchronized timestamped dictation transcription, and manual labels for validation of localization of abnormalities.

computer vision eye tracking radiology report machine learning chest x-rays radiology reflacx fixations gaze deep learning

Published: Sept. 27, 2021. Version: 1.0.0

Database Credentialed Access

CXR-PRO: MIMIC-CXR with Prior References Omitted

Vignav Ramesh, Nathan Chi, Pranav Rajpurkar

CXR-PRO is an adaptation of the MIMIC-CXR dataset (consisting of chest radiographs and their associated free-text radiology reports) with references to non-existent priors removed.

generation large language models free-text radiology reports references to priors retrieval

Published: Nov. 23, 2022. Version: 1.0.0

Database Credentialed Access

MIMIC-III Clinical Database

Alistair Johnson, Tom Pollard, Roger Mark

MIMIC-III is a large, freely-available database comprising deidentified health-related data associated with over forty thousand patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012. The databas…

clinical intensive care machine learning critical care natural language processing

Published: Sept. 4, 2016. Version: 1.4

Database Credentialed Access

MIMIC-IV

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

Database of patients admitted to the Beth Israel Deaconess Medical Center

mimic machine learning critical care intensive care unit

Published: Jan. 6, 2023. Version: 2.2

Database Credentialed Access

MIMIC-II Clinical Database

Mohammed Saeed, Mauricio Villarroel, Andrew Reisner, Gari Clifford, Li-wei Lehman, George Moody, Thomas Heldt, Tin Kyaw, Benjamin Moody, Roger Mark

Electronic health record data collected from >30,000 patients admitted to ICUs at a single tertiary care hospital.

ehr icu mimic-ii bidmc

Published: April 24, 2011. Version: 2.6.0

Database Credentialed Access

Chest X-ray Dataset with Lung Segmentation

Wimukthi Indeewara, Mahela Hennayake, Kasun Rathnayake, Thanuja Ambegoda, Dulani Meedeniya

CXLSeg dataset: Chest X-ray with Lung Segmentation, a comparatively large dataset of segmented Chest X-ray radiographs based on the MIMIC-CXR dataset. This contains segmentation results of 243,324 frontal view images and corresponding masks.

segmentation chest x-ray medical reports mimic-cxr u-net chest radiographs

Published: Feb. 8, 2023. Version: 1.0.0

Database Credentialed Access

Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries

Melissa Poulsen, Vanessa Troiani, Philip Freda, Danielle Mowery, Anahita Davoudi

The database contains a corpus of annotated data from the MIMIC-III Critical Care Database from a study that aimed to develop and apply an annotation schema to characterize opioid use disorder and related contextual factors.

clinical notes substance use natural language processing opioid use disorder

Published: Feb. 8, 2023. Version: 1.0.0

Database Credentialed Access

MIMIC-III - SequenceExamples for TensorFlow modeling

Jonas Kemp, Kun Zhang, Andrew Dai

MIMIC-III data converted into TensorFlow SequenceExample format, for use in modeling pipelines.

tensorflow sequence modeling machine learning deep learning

Published: Sept. 29, 2020. Version: 1.0.0

Database Open Access

MIMIC-IV Clinical Database Demo

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

An openly available subset of patients in the MIMIC-IV database.

mimic critical care electronic health record

Published: Jan. 31, 2023. Version: 2.2

Database Open Access

MIMIC-IV Clinical Database Demo on FHIR

Alex Bennett, Joshua Wiedekopf, Hannes Ulrich, Alistair Johnson

MIMIC-IV-on-FHIR is a hundred patient demo of MIMIC-IV v2.0 in the Fast Healthcare Interoperability Resources(FHIR) format. MIMIC-IV-on-FHIR provides implementers with a real-world FHIR datastore to aid in FHIR research and development.

mimic electronic health records fhir

Published: June 7, 2022. Version: 2.0