Resources
70 results for "clinical annotation"
Database
Credentialed Access
RadQA: A Question Answering Dataset to Improve Comprehension of Radiology Reports
We present a radiology question answering dataset, RadQA, with 3074 questions posed against radiology reports and annotated with their corresponding answer spans (resulting in a total of 6148 question-answer evidence pairs) by physicians. The questi…
Database
Credentialed Access
PIFIR: PET-CT Invasive Fungal Infection Reports
Surveillance of invasive fungal infection (IFI) in clinical settings is a laborious process requiring a detailed review of patient medical history. One of the key sources of clinical information is imaging reports: radiologist-produced free-text rep…
Database
Credentialed Access
CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports
Surveillance of invasive fungal infection (IFI) in clinical settings is a laborious process requiring a detailed review of patient medical history. One of the key sources of clinical information is cytology and histopathology reports: pathologist-pr…
Database
Open Access
MIT-BIH Arrhythmia Database
The MIT-BIH Arrhythmia Database contains 48 approximately half-hour, two-channel ambulatory electrocardiogram (ECG) recordings from 47 subjects. The recordings were collected at Boston's Beth Israel Hospital between 1975 and 1979 and include both ra…
Database
Contributor Review
CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools
The CARMEN-I corpus comprises 2,000 clinical records, encompassing discharge letters, referrals, and radiology reports from Hospital Clínic of Barcelona between March 2020 and March 2022. These reports, primarily in Spanish with some Catalan section…
Database
Restricted Access
MIMIC-Eye: Integrating MIMIC Datasets with REFLACX and Eye Gaze for Multimodal Deep Learning Applications
Deep learning technologies have been widely adopted in medical imaging due to their ability to extract features from images and make accurate diagnoses automatically. Medical imaging technologies are particularly useful because they can be trained t…
Database
Credentialed Access
RadGraph2: Tracking Findings Over Time in Radiology Reports
RadGraph2 is a dataset of 800 chest radiology reports annotated using a fine-grained entity-relationship schema, which is an expanded version of the previously introduced RadGraph dataset. In contrast with the previous approaches and the original Ra…
Model
Credentialed Access
EntityBERT: BERT-based Models Pretrained on MIMIC-III with or without Entity-centric Masking Strategy for the Clinical Domain
Transformer-based neural language models have led to breakthroughs for a variety of natural language processing (NLP) tasks. However, most models are pretrained on general domain data. We propose a methodology to produce a model focused on the clini…
Database
Credentialed Access
RadNLI: A natural language inference dataset for the radiology domain
The problem of natural language inference (NLI) determines whether a natural language hypothesis can be justifiably inferred from a natural language premise. NLI has attracted researchers to benchmark it in a number of settings including medical one…
Database
Credentialed Access
National Institutes of Health Stroke Scale (NIHSS) Annotations for the MIMIC-III Database
The National Institutes of Health Stroke Scale (NIHSS) is a 15-item neurologic examination stroke scale. It quantifies the physical manifestations of neurological deficits and provides crucial support for clinical decision making and early-stage eme…