Resources
Challenge Credentialed Access
SNOMED CT Entity Linking Challenge
Will Hardman, Mark Banks, Rory Davidson, Donna Truran, Nindya Widita Ayuningtyas, Hoa Ngo, Alistair Johnson, Tom Pollard
snomed entity linking clinical annotation
Published: Dec. 19, 2023. Version: 1.0.0
Database Restricted Access
VinDr-SpineXR: A large annotated medical image dataset for spinal lesions detection and classification from radiographs
Hieu Huy Pham, Hieu Nguyen Trung, Ha Quy Nguyen
Published: Aug. 24, 2021. Version: 1.0.0
Database Credentialed Access
RadQA: A Question Answering Dataset to Improve Comprehension of Radiology Reports
Sarvesh Soni, Kirk Roberts
electronic health records clinical notes question answering radiology reports machine reading comprehension
Published: Dec. 9, 2022. Version: 1.0.0
Database Credentialed Access
CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports
Vlada Rozova, Anna Khanina, Jasmine Teng, Joanne Teh, Leon Worth, Monica Slavin, karin thursky, Karin Verspoor
nlp information extraction clinical documentation invasive fungal infections
Published: Feb. 20, 2024. Version: 1.0.2
Database Credentialed Access
CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports
Vlada Rozova, Anna Khanina, Jasmine Teng, Joanne Teh, Leon Worth, Monica Slavin, karin thursky, Karin Verspoor
nlp information extraction clinical documentation invasive fungal infections
Published: Feb. 20, 2024. Version: 1.0.2
Database Contributor Review
CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools
Eulalia Farre Maduell, Salvador Lima-Lopez, Santiago Andres Frid, Artur Conesa, Elisa Asensio, Antonio Lopez-Rueda, Helena Arino, Elena Calvo, Maria Jesús Bertran, Maria Angeles Marcos, Montserrat Nofre Maiz, Laura Tañá Velasco, Antonia Marti, Ricardo Farreres, Xavier Pastor, Xavier Borrat Frigola, Martin Krallinger
de-identification clinical ner anonymization
Published: April 20, 2024. Version: 1.0.1
Database Restricted Access
MIMIC-Eye: Integrating MIMIC Datasets with REFLACX and Eye Gaze for Multimodal Deep Learning Applications
Chihcheng Hsieh, Chun Ouyang, Jacinto C Nascimento, Joao Pereira, Joaquim Jorge, Catarina Moreira
Published: March 23, 2023. Version: 1.0.0
Model Credentialed Access
EntityBERT: BERT-based Models Pretrained on MIMIC-III with or without Entity-centric Masking Strategy for the Clinical Domain
Chen Lin, Steven Bethard, Guergana Savova, Timothy Miller, Dmitriy Dligach
Published: March 17, 2022. Version: 1.0.1
Database Credentialed Access
RadNLI: A natural language inference dataset for the radiology domain
Yasuhide Miura, Yuhao Zhang, Emily Tsai, Curtis Langlotz, Dan Jurafsky
Published: June 29, 2021. Version: 1.0.0
Database Credentialed Access
National Institutes of Health Stroke Scale (NIHSS) Annotations for the MIMIC-III Database
Jiayang Wang, Xiaoshuo Huang, Lin Yang, Jiao Li
Published: Jan. 25, 2021. Version: 1.0.0