Resources
41 results for "information extraction"
Model
Credentialed Access
Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes
This project contains the weights of 7 different BERT models trained over a surrogate re-identified set of MIMIC-III (v1.4) notes. Each model is suitable for direct compatibility with the HuggingFace framework; users can easily load and apply the mo…
Database
Credentialed Access
Curated Data for Describing Blood Glucose Management in the Intensive Care Unit
Analysis of real-world glucose and insulin clinical data recorded in electronic health records can provide insights into tailored approaches to clinical care, but still present many analytic challenges. The present data subsets are the result of a d…
Database
Restricted Access
CheXchoNet: A Chest Radiograph Dataset with Gold Standard Echocardiography Labels
Existing chest radiograph datasets, such as CheXpert and ChestX-ray14, have driven the development of new machine learning approaches to achieve expert or near-expert level performance on a variety of tasks. The primary focus of models developed usi…
Database
Restricted Access
MIMIC-Eye: Integrating MIMIC Datasets with REFLACX and Eye Gaze for Multimodal Deep Learning Applications
Deep learning technologies have been widely adopted in medical imaging due to their ability to extract features from images and make accurate diagnoses automatically. Medical imaging technologies are particularly useful because they can be trained t…
Database
Credentialed Access
CAD-Chest: Comprehensive Annotation of Diseases based on MIMIC-CXR Radiology Report
Several extant chest X-ray (CXR) datasets predominantly comprise binary disease labels and exhibit a deficiency in providing comprehensive disease-related information. Crucial facets of disease management, including disease severity, diagnostic unce…
Database
Credentialed Access
MIMIC-IV-Ext clinical decision support for referral, triage and diagnosis
Accurate medical decision-making is critical for both patients and clinicians. Patients often find it difficult to interpret their symptoms, determine their severity, and select the right specialist to see. At the same time, clinicians face challeng…
Database
Credentialed Access
MIMIC-III-Ext-VeriFact-BHC: Labeled Propositions From Brief Hospital Course Summaries for Long-form Clinical Text Evaluation
The VeriFact-BHC dataset is designed to verify the factuality of long-form text written about a patient against their own electronic health record. There is increasing interest in using large language models (LLMs) to generate clinical text in patie…
natural language processing
clinical informatics
formal logic
clinical notes
chart review
text embedding
brief hospital course
long-form text
logical atomism
retrieval-augmented generation
text reranking
clinical medicine
atomic claim
fact verification
hybrid retrieval
llm-as-a-judge
llm evaluation
electronic health records
large language models
artificial intelligence
Database
Credentialed Access
RadCoref: Fine-tuning coreference resolution for different styles of clinical narratives
RadCoref is a small subset of MIMIC-CXR with manually annotated coreference mentions and clusters. The dataset is annotated by a panel of three cross-disciplinary experts with experience in clinical data processing following the i2b2 annotation sche…
Database
Credentialed Access
PIFIR: PET-CT Invasive Fungal Infection Reports
Surveillance of invasive fungal infection (IFI) in clinical settings is a laborious process requiring a detailed review of patient medical history. One of the key sources of clinical information is imaging reports: radiologist-produced free-text rep…
Database
Credentialed Access
CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports
Surveillance of invasive fungal infection (IFI) in clinical settings is a laborious process requiring a detailed review of patient medical history. One of the key sources of clinical information is cytology and histopathology reports: pathologist-pr…