Resources


Database Credentialed Access

MIMIC-III and eICU-CRD: Feature Representation by FIDDLE Preprocessing

Shengpu Tang, Parmida Davarmanesh, Yanmeng Song, et al.

Features and labels from MIMIC-III and eICU-CRD produced by FIDDLE, an EHR preprocessing pipeline.

preprocessing electronic health record machine learning

Published: April 28, 2021. Version: 1.0.0

Database Restricted Access

Gout Emergency Department Chief Complaint Corpora

John David Osborne, Tobias O'Leary, Amy Mudano, et al.

A corpus of chief complaints tagged with predicted gout flare status and chart reviewed gout flare status. Ideal for input to masked language model training to supplement lengthy clinical text notes.

gout emergency department nlp

Published: Oct. 19, 2020. Version: 1.0

Database Credentialed Access

MedNLI for Shared Task at ACL BioNLP 2019

Chaitanya Shivade

Data for the MedNLI Shared Task at the 2019 ACL BioNLP 2019 Workshop on Biomedical Language Processing

natural language inference recognizing textual entailment mimic

Published: Nov. 28, 2019. Version: 1.0.1

Database Credentialed Access

MedNLI - A Natural Language Inference Dataset For The Clinical Domain

Chaitanya Shivade

This is a resource for training machine learning models for language inference in the medical domain.

natural language inference recognizing textual entailment

Published: Oct. 1, 2019. Version: 1.0.0

Model Credentialed Access

What's in a Note? Unpacking Predictive Value in Clinical Note Representations

Tristan Naumann, William Boag

Word vectors corresponding to the AMIA 2018 Informatics Summit paper of the same name.

Published: Jan. 7, 2018. Version: 0.1

Software Open Access

Random Search Toolbox

A major issue with many signal processing and machine learning algorithms is the lack of optimisation methods for determining the numerous hyper-parameters associated with the model as well as the knowledge of which hyper-parameters are relevant. Th…

Published: Nov. 4, 2014. Version: 1.0.0

Software Open Access

CVSim

CVSim is a lumped-parameter model of the human cardiovascular system that has been developed and used for research and for teaching quantitative physiology courses at MIT and Harvard Medical School since 1984. The versions presented here have a grap…

cardiovascular simulation

Published: March 16, 2007. Version: 1.0.0

Challenge Open Access

Electrocardiographic Imaging of Myocardial Infarction: The PhysioNet/Computing in Cardiology Challenge 2007

The aim of Challenge 2007 is to establish how well one can characterize the location and extent of moderate to large, relatively compact infarcts using electrocardiographic evidence (supplemented by a model of the torso geometry and conductivity), i…

imaging challenge ecg

Published: Jan. 2, 2007. Version: 1.0.0

Challenge Open Access

The First Five Challenges Revisited: The PhysioNet/Computing in Cardiology Challenge 2005

Our popular series of challenges presented in cooperation with Computers in Cardiology continues this year in a new mode. Participants are invited to choose one of the five previous challenges as a topic for a follow-up study:

  • Detecting sleep apn…

challenge

Published: May 2, 2005. Version: 1.0.0

Database Open Access

Myocardial perfusion scintigraphy image database

Wesley Calixto, Solange Nogueira, Fernanda Luz, et al.

This database provides a collection of myocardial perfusion scintigraphy images. The dataset encompasses a diversity of clinical cases, including various perfusion patterns and underlying cardiac conditions.

nifti artificial intelligence anonymization clinical diagnosis myocardial perfusion systems modeling myocardial perfusion scintigraphy dicom metadata ventricular walls coronary artery disease convolutional neural networks automated segmentation

Published: Sept. 9, 2025. Version: 1.0.0