Resources

Named Entity Recognition (NER) and Entity Normalization (EN) are fundamental tasks in information extraction, particularly in the biomedical and clinical domains. NER identifies textual mentions of entities, while EN maps these mentions to unique id…

The CheXmask Database presents a comprehensive, uniformly annotated collection of chest radiographs, constructed from five public databases: ChestX-ray8, Chexpert, MIMIC-CXR-JPG, Padchest and VinDr-CXR. The database aggregates 657,566 anatomical seg…

Fast Healthcare Interoperability Resources (FHIR) has emerged as a robust standard for healthcare data exchange. To explore the use of FHIR for the process of data harmonization, we converted the Medical Information Mart for Intensive Care IV (MIMIC…

COVID Data for Shared Learning (CDSL) is a multimodal database comprising de-identified medical data from 4,479 patients who were hospitalized with confirmed or suspected COVID-19 in the Spanish 'HM Hospitales' group from 2019-12-26 to 2021-02-13. T…

The Contextualized Race and Ethnicity Annotations for Clinical Text (C-REACT) dataset is a large publicly available corpus of sentences from clinical notes manually annotated for information related to race and ethnicity (RE). The corpus presented h…

The CPS dataset, assembled at Klinikum Esslingen, Germany, encompasses 113 diagnostic polysomnographic sleep recordings. These recordings include up to 36 raw and 23 derived data channels, alongide 81 types of annotated events for each participant, …

Measurable progress in the development of medical decision support systems has been hindered by a lack of comprehensive datasets. Many available datasets focus on narrow prediction tasks and do not include a diverse range of data types, which limits…

The SICdb dataset offers insights into over 27 thousand intensive care admissions, including therapies and data on preceding surgeries. Data were collected between 2013 and 2021 from four different intensive care units at the University Hospital Sal…

Monitoring nociception, the flow of information associated with harmful stimuli through the nervous system even during unconsciousness, is critical for proper anesthesia care during surgery. Currently, this is done by tracking heart rate and blood p…

The wide adoption of pulse oximeters has given clinicians an easy, non-invasive way to measure arterial oxygen saturation. However, evidence suggests that pulse oximeter measurements have a deeper discrepancy in patients of darker skin tones compare…