Resources
24 results for "clinical coding"
Database
Credentialed Access
MIMIC-IV-Ext-EntityCoding: Clinical Named Entity Recognition and Assertion Classification Dataset for ICD Coding
This dataset provides clinical Named Entity Recognition (NER) and Assertion Classification (AC) annotations for 400 discharge summaries from MIMIC-IV-Note (v2.2), designed to support research on computer-assisted ICD coding and related clinical natu…
Model
Credentialed Access
Fine-tuning foundational models to code diagnoses from veterinary health records
Veterinary medical records represent a large data resource for application to veterinary and One Health clinical research efforts. Use of the data is limited by interoperability challenges including inconsistent data formats and data siloing. Clinic…
Database
Credentialed Access
MIMIC-IV-Ext-MDS-ED: Multimodal Decision Support in the Emergency Department - a Benchmark Dataset for Diagnoses and Deterioration Prediction in Emergency Medicine
Measurable progress in the development of medical decision support systems has been hindered by a lack of comprehensive datasets. Many available datasets focus on narrow prediction tasks and do not include a diverse range of data types, which limits…
Database
Credentialed Access
MIMIC-IV-Ext MIMIC Note Extract: A Large-Scale Structured Dataset Extracted from MIMIC-IV-Note Discharge Summaries
MIMIC is one of the most widely used public hospital datasets for machine learning on electronic health records [3], but its structured tables answer many clinical questions only through coded surrogates, or not at all. For example, a patient's past…
Database
Credentialed Access
EHR-DS-QA: A Synthetic QA Dataset Derived from Medical Discharge Summaries for Enhanced Medical Information Retrieval Systems
This dataset was designed and created to enable advancements in healthcare-focused large language models, particularly in the context of retrieval-augmented clinical question-answering capabilities. Developed using a self-constructed pipeline based …
Software
Credentialed Access
Code for generating the HAIM multimodal dataset of MIMIC-IV clinical data and x-rays
A multimodal combination of the MIMIC-IV v1.0.0 and MIMIC Chest X-ray (MIMIC-CXR-JPG) v2.0.0 databases filtered to only include patients that have at least one chest X-ray performed with the goal of validating multi-modal predictive analytics in hea…
Database
Credentialed Access
Learning to Ask Like a Physician: a Discharge Summary Clinical Questions (DiSCQ) Dataset
Existing question answering (QA) datasets derived from electronic health records (EHR) are artificially generated and consequently fail to capture realistic physician information needs. We present Discharge Summary Clinical Questions (DiSCQ), a newl…
Database
Contributor Review
ELDER-ICU-DB: A Comprehensive Critical Care Data Resource for International Multicenter Study on Elderly ICU Patients
Critically ill elderly patients, characterized by high mortality and complex comorbidities, pose growing challenges to ICUs while consuming substantial healthcare resources. Current clinical research on this vulnerable population predominantly relie…
Model
Credentialed Access
What's in a Note? Unpacking Predictive Value in Clinical Note Representations
Unlocking the full potential of clinical notes within electronic health records presents a challenge for large scale, computational analyses. Many studies that incorporate information from clinical notes do so with simple word-matching approaches an…
Database
Credentialed Access
Annotated Social Determinants of Health Dataset for Adverse Pregnancy Outcomes
This project presents an annotated dataset derived from MIMIC-III and MIMIC-IV discharge summaries, focusing on key Social Determinants of Health (SDoH) factors—social support, occupation, and substance use—and their association with adverse pregnan…