Resources
444 resources
Database
Restricted Access
OpenOximetry Repository
A repository of matched arterial oxygen and pulse oximeter readings obtained under controlled conditions, with high-frequency physiologic waveforms and skin color measurements.
Database
Credentialed Access
PIFIR: PET-CT Invasive Fungal Infection Reports
A corpus of PET-CT reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.
Database
Open Access
A Multimodal Dataset for Investigating Working Memory in Presence of Music
A multimodal dataset containing fNIRS data along with a wide range of physiological signals like EDA, HR, PPG, etc over the course of n-back experiments in presence of music.
Database
Restricted Access
LATTE-CXR: Locally Aligned TexT and imagE, Explainable dataset for Chest X-Rays
This dataset includes bounding box-statement pairs for chest X-ray images, derived from radiologists’ eye-tracking data (for explainability) and annotations, for local visual-language models.
Database
Restricted Access
Application of Med-PaLM 2 in the refinement of MIMIC-CXR labels
This work further refines the labels associated with CheXpert in MIMIC-CXR-JPG 2.0.0 by filtering with Med-PaLM 2 followed by verification by manual review by three US board-certified radiologists.
Database
Credentialed Access
MIMIC-IV-Ext-BHC: Labeled Clinical Notes Dataset for Hospital Course Summarization
This dataset presents a collection of preprocessed and labeled clinical notes derived from "MIMIC-IV-Note", and aims to facilitate the development of ML models focused on summarizing brief hospital courses (BHC) from clinical notes.
Database
Open Access
Synthetic Mention Corpora for Disease Entity Recognition and Normalization
We present the Synthetic Mention Corpora for Disease Entity Recognition and Normalization, containing 128000 disease mentions from the UMLS disorder group, generated by an LLM. This corpus aims to improve these tasks in biomedical and clinical texts.
Database
Credentialed Access
Medical-Diff-VQA: A Large-Scale Medical Dataset for Difference Visual Question Answering on Chest X-Ray Images
MIMIC-Diff-VQA provides a large-scale dataset for Difference visual question answering in medical chest x-ray images.
Database
Restricted Access
CXRGraph: Using Information Extraction to Normalize the Training Data for Automatic Radiology Report Generation
CXRGraph is a structured radiology report dataset built upon RadGraph and tailored for the Automatic Radiology Report Generation task. It can identify more task-relevant information such as abnormalities and hallucinated prior references.
Database
Credentialed Access
Symile-MIMIC: a multimodal clinical dataset of chest X-rays, electrocardiograms, and blood labs from MIMIC-IV
A multimodal clinical dataset consisting of CXRs, ECGs, and blood labs, designed to evaluate Symile, a simple contrastive loss that accommodates any number of modalities and allows any model to produce representations for each modality.