Resources


Database Credentialed Access

MIMIC-IV-ED

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Leo Anthony Celi, Roger Mark, Steven Horng

A large database of emergency department admissions.

mimic emergency department ed mimic-iv emergency electronic health record

Published: Jan. 5, 2023. Version: 2.2

Database Restricted Access

Hospitalized patients with heart failure: integrating electronic healthcare records and external outcome data

Zhongheng Zhang, Linghong Cao, Yan Zhao, Ziyin Xu, Rangui Chen, Lukai Lv, Ping Xu

The new version added beta blockers in the dat_md.csv file. Dataset comprising hospital-level data on patients who were admitted with heart failure to Zigong Fourth People’s Hospital, Sichuan, China between 2016 and 2019.

heart failure china electronic health record

Published: May 22, 2022. Version: 1.3

Database Credentialed Access

MIMIC-III and eICU-CRD: Feature Representation by FIDDLE Preprocessing

Shengpu Tang, Parmida Davarmanesh, Yanmeng Song, Danai Koutra, Michael Sjoding, Jenna Wiens

Features and labels from MIMIC-III and eICU-CRD produced by FIDDLE, an EHR preprocessing pipeline.

preprocessing machine learning electronic health record

Published: April 28, 2021. Version: 1.0.0

Database Open Access

MIMIC-III Clinical Database Demo

Alistair Johnson, Tom Pollard, Roger Mark

An open source demo of the MIMIC-III Clinical Database

mimic critical care electronic health records

Published: April 24, 2019. Version: 1.4

Challenge Contributor Review

BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization

Yanjun Gao, Dmitriy Dligach, Timothy Miller, Majid Afshar

This is the data storage for BioNLP Workshop Shared Task 1A: Problem List Summarization.

electronic health record summarization bionlp clinical natural language processing

Published: April 13, 2023. Version: 1.1.0

Database Credentialed Access

SCRIPT CarpeDiem Dataset: demographics, outcomes, and per-day clinical parameters for critically ill patients with suspected pneumonia

Nikolay Markov, Catherine A Gao, Thomas Stoeger, Anna Pawlowski, Mengjia Kang, Prasanth Nannapaneni, Rogan Grant, Luke Rasmussen, Daniel Schneider, Justin Starren, Richard Wunderink, GR Scott Budinger, Alexander Misharin, Benjamin Singer, NU SCRIPT Study Investigators

SCRIPT seeks to delineate the host/pathogen interactions during pneumonia using multiomic analysis of bronchoalveolar lavage fluid joined with clinical data and physician adjudication.

Published: March 13, 2023. Version: 1.1.0

Database Open Access

MIMIC-IV Clinical Database Demo

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

An openly available subset of patients in the MIMIC-IV database.

mimic critical care electronic health record

Published: Jan. 31, 2023. Version: 2.2

Software Open Access

Waveform Database Software Package (WFDB) for Python

Chen Xie, Lucas McCullum, Alistair Johnson, Tom Pollard, Brian Gow, Benjamin Moody

Tools for working with waveforms in Python.

waveform wfdb python

Published: Jan. 24, 2023. Version: 4.1.0

Database Credentialed Access

MIMIC-IV

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

Large database of de-identified health information from patients admitted to Beth Israel Deaconess Medical Center

mimic machine learning critical care intensive care unit

Published: Jan. 6, 2023. Version: 2.2

Database Credentialed Access

MIMIC-IV-ED

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Leo Anthony Celi, Roger Mark, Steven Horng

A large database of emergency department admissions.

mimic emergency department ed mimic-iv emergency electronic health record

Published: Jan. 5, 2023. Version: 2.2