Resources


Database Restricted Access

DREAMT: Dataset for Real-time sleep stage EstimAtion using Multisensor wearable Technology

Ke Wang, Jiamu Yang, Ayush Shetty, Jessilyn Dunn

Dataset for Real-time sleep stage EstimAtion using Multisensor wearable Technology

wearable biomedical sleep disorders time series classification

Published: April 30, 2024. Version: 1.0.0

Database Credentialed Access

MIMIC-CXR-JPG - chest radiographs with structured labels

Alistair Johnson, Matthew Lungren, Yifan Peng, Zhiyong Lu, Roger Mark, Seth Berkowitz, Steven Horng

Chest x-rays in JPG format with structured labels derived from the associated radiology report.

computer vision radiology mimic deep learning chest x-ray

Published: March 12, 2024. Version: 2.1.0

Database Credentialed Access

ODD: A Benchmark Dataset for the NLP-based Opioid Related Aberrant Behavior Detection

Sunjae Kwon, Xun Wang, Weisong Liu, Emily Druhl, Minhee Sung, Joel Reisman, Wenjun Li, Robert Kerns, William Becker, Hong Yu

Opioid-related aberrant behaviors (ORABs) detection Dataset (ODD) which is a large-size, expert-annotated, and multi-label classification benchmark dataset corresponding to the task

substance use natural language processing opioid related aberrant behavior

Published: Jan. 11, 2024. Version: 1.0.0

Database Credentialed Access

BOLD, a blood-gas and oximetry linked dataset

João Matos, Tristan Struja, Jack Gallifant, Luis Filipe Nakayama, Marie Charpignon, Xiaoli Liu, Jaime dos Santos Cardoso, Leo Anthony Celi, An Kwok Wong

An open-source pulse oximetry and arterial blood gas dataset, derived from MIMIC-III, MIMIC-IV, and eICU-CRD

health equity pulse oximetry intensive care unit electronic health records

Published: Nov. 8, 2023. Version: 1.0

Database Credentialed Access

GLOBEM Dataset: Multi-Year Datasets for Longitudinal Human Behavior Modeling Generalization

Xuhai Xu, Han Zhang, Yasaman Sefidgar, Yiyi Ren, Xin Liu, Woosuk Seo, Jennifer Brown, Kevin Kuehn, Mike Merrill, Paula Nurius, Shwetak Patel, Tim Althoff, Margaret Morris, Eve Riskin, Jennifer Mankoff, Anind Dey

GLOBEM datasets contain the first released multi-year mobile and wearable sensing datasets from 2018 to 2021, containing 705 person-years and 497 unique participants.

health ubiquitous computing well-being passive mobile sensing human behavior modeling

Published: March 14, 2023. Version: 1.1

Database Credentialed Access

Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries

Melissa Poulsen, Vanessa Troiani, Philip Freda, Danielle Mowery, Anahita Davoudi

The database contains a corpus of annotated data from the MIMIC-III Critical Care Database from a study that aimed to develop and apply an annotation schema to characterize opioid use disorder and related contextual factors.

opioid use disorder clinical notes substance use natural language processing

Published: Feb. 8, 2023. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Note: Deidentified free-text clinical notes

Alistair Johnson, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

Deidentified free-text clinical notes for patients in the MIMIC-IV Clinical Database.

deidentification critical care clinical notes electronic health record natural language processing mimic

Published: Jan. 6, 2023. Version: 2.2

Database Credentialed Access

NCH Sleep DataBank: A Large Collection of Real-world Pediatric Sleep Studies with Longitudinal Clinical Data

Harlin Lee, Boyue Li, Yungui Huang, Yuejie Chi, Simon Lin

The NCH Sleep DataBank includes 3,984 pediatric sleep studies on 3,673 unique patients conducted at Nationwide Children's Hospital between 2017 and 2019. It contains polysomnography (PSG), clinical annotations, and longitudinal clinical data.

eeg ehr polysomnography pediatrics clinical decision support sleep study ecg sleep disorders electronic health records

Published: Oct. 27, 2021. Version: 3.1.0

Model Credentialed Access

Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes

Eric Lehman, Sarthak Jain, Karl Pichotta, Yoav Goldberg, Byron Wallace

We explore recovering sensitive info from BERT trained over non-deidentified EHR. We make our models and data available to further facilitate research.

Published: April 28, 2021. Version: 1.0.0

Challenge Open Access

Early Prediction of Sepsis from Clinical Data: The PhysioNet/Computing in Cardiology Challenge 2019

Matthew Reyna, Chris Josef, Russell Jeter, Supreeth Shashikumar, Benjamin Moody, M. Brandon Westover, Ashish Sharma, Shamim Nemati, Gari D. Clifford

The 2019 PhysioNet Computing in Cardiology Challenge invites participants to predict sepsis in clinical data

prediction sepsis challenge

Published: Aug. 5, 2019. Version: 1.0.0