Resources


Database Credentialed Access

CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jasmine Teng, et al.

A corpus of cytology and histopathology reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.

nlp clinical documentation information extraction invasive fungal infections

Published: Feb. 20, 2024. Version: 1.0.2

Database Credentialed Access

EHR-DS-QA: A Synthetic QA Dataset Derived from Medical Discharge Summaries for Enhanced Medical Information Retrieval Systems

Konstantin Kotschenreuther

Dataset consisting of question and answer pairs synthetically generated from medical discharge summaries, designed to facilitate the training and development of large language models specifically tailored for healthcare applications

mimic-iv clinical question-answering medical discharge summaries large language models

Published: Jan. 11, 2024. Version: 1.0.0

Challenge Open Access

Heart Murmur Detection from Phonocardiogram Recordings: The George B. Moody PhysioNet Challenge 2022

Matthew Reyna, Yashar Kiarashi, Andoni Elola, et al.

2022 Physionet Challenge is devoted to detecting the presence or absence of murmurs from multiple heart sound recordings from multiple auscultation locations, as well as detecting the clinical outcomes.

challenge competition cardiac auscultation congenital heart diseases

Published: Sept. 28, 2023. Version: 1.0.0

Database Open Access

Electroencephalogram and eye-gaze datasets for robot-assisted surgery performance evaluation

Somayeh B Shafiei, Saeed Shadpour, James Mohler, et al.

The brain activity and eye gaze data were recorded from 25 participants performing surgical tasks using a robot simulator. The performance score was created by the simulator. Data can be used to evaluate surgical performance.

Published: July 14, 2023. Version: 1.0.0

Visualize waveforms

Database Open Access

PTB-XL+, a comprehensive electrocardiographic feature dataset

Nils Strodthoff, Temesgen Mehari, Claudia Nagel, et al.

ECG feature dataset accompanying the PTB-XL ECG dataset

ptb-xl ptb electrocardiography ecg

Published: June 27, 2023. Version: 1.0.1

Visualize waveforms

Database Credentialed Access

MIMICEL: MIMIC-IV Event Log for Emergency Department

Jia Wei, Zhipeng He, Chun Ouyang, et al.

MIMIC-IV Event Log for Emergency Department

Published: June 16, 2023. Version: 2.1.0

Database Credentialed Access

Establishment of a Chinese critical care database from electronic healthcare records in a tertiary care medical center

Senjun Jin, Lin Chen, Kun Chen, et al.

Chinese critical care database from electronic healthcare records in a tertiary care medical center

china database critical care

Published: Jan. 19, 2023. Version: 1.0

Database Open Access

PTB-XL, a large publicly available electrocardiography dataset

Patrick Wagner, Nils Strodthoff, Ralf-Dieter Bousseljot, et al.

The PTB-XL ECG dataset is a large dataset of 21801 clinical 12-lead ECGs from 18869 patients of 10 second length. The raw signal data has been annotated by up to two cardiologists with 71 different ECG statements and is supplemented by rich metadata.

ptb-xl ptb electrocardiography ecg

Published: Nov. 9, 2022. Version: 1.0.3

Visualize waveforms

Database Restricted Access

Multimodal Physiological Monitoring During Virtual Reality Piloting Tasks

Hrishikesh Rao, Emilie Cowen, Sophia Yuditskaya, et al.

Physiologic and flight performance data from a virtual reality task. Data for the CogPilot Data Challenge.

Published: Aug. 25, 2022. Version: 1.0.0

Software Credentialed Access

Code for generating the HAIM multimodal dataset of MIMIC-IV clinical data and x-rays

Luis R Soenksen, Yu Ma, Cynthia Zeng, et al.

Code for generating the HAIM multimodal dataset of MIMIC-IV clinical data and x-rays

database code multimodality

Published: Aug. 23, 2022. Version: 1.0.1