Resources


Database Credentialed Access

RadVLM Instruction Dataset

Nicolas Deperrois, Hidetoshi Matsuo, Samuel Ruiperez-Campillo, Moritz Vandenhirtz, Sonia Laguna, Alain Ryser, Koji Fujimoto, Mizuho Nishio, Thomas Sutter, Julia Vogt, Jonas Kluckert, Thomas Frauenfelder, Christian Bluethgen, Farhad Nooralahzadeh, Michael Krauthammer

This dataset is designed to construct RadVLM, a vision–language model for chest X-ray interpretation. It includes instruction data for tasks such as report generation, abnormality detection, and region grounding, and multitask conversation.

chest x-rays vision-language models medical ai

Published: Sept. 25, 2025. Version: 1.0.0

Database Restricted Access

MIMIC-IV-Ext-Apixaban-Trial-Criteria-Questions

Elizabeth Woo, Michael Craig Burkhart, Emily Alsentzer, Brett Beaulieu-Jones

We created 23 questions resembling eligibility criteria from the apixaban clinical trial and evaluated them on a random sample of 100 patient notes from MIMIC-IV. We release the 2300 total question-answer pairs as a dataset here.

clinical q and a evaluation set clinical trial eligibility

Published: April 30, 2025. Version: 1.0.0

Challenge Credentialed Access

ArchEHR-QA: BioNLP at ACL 2025 Shared Task on Grounded Electronic Health Record Question Answering

Sarvesh Soni, Dina Demner-Fushman

A dataset for grounded question answering (QA) from electronic health records (EHRs).

electronic health record question answering clinicians patient portals

Published: April 11, 2025. Version: 1.2

Database Credentialed Access

Symile-MIMIC: a multimodal clinical dataset of chest X-rays, electrocardiograms, and blood labs from MIMIC-IV

Adriel Saporta, Aahlad Manas Puli, Mark Goldstein, Rajesh Ranganath

A multimodal clinical dataset consisting of CXRs, ECGs, and blood labs, designed to evaluate Symile, a simple contrastive loss that accommodates any number of modalities and allows any model to produce representations for each modality.

database cxr ecg chest x-ray mimic contrastive learning model multimodal electrocardiogram

Published: Jan. 28, 2025. Version: 1.0.0

Challenge Credentialed Access

BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization

Yanjun Gao, Dmitriy Dligach, Timothy Miller, Majid Afshar

This is the data storage for BioNLP Workshop Shared Task 1A: Problem List Summarization.

bionlp clinical natural language processing electronic health record summarization

Published: Nov. 12, 2023. Version: 2.0.0

Database Credentialed Access

Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization

Yanjun Gao, John Caskey, Timothy Miller, Brihat Sharma, Matthew Churpek, Dmitriy Dligach, Majid Afshar

We introduce a hierarchical annotation suite of tasks addressing clinical text understanding, reasoning and abstraction over evidence, and diagnosis summarization. One task is section tagging major section and the other task is diagnosis generation.

Published: Sept. 30, 2022. Version: 1.0.0

Database Credentialed Access

Critical care database comprising patients with infection at Zigong Fourth People's Hospital

Ping Xu, Lin Chen, Zhongheng Zhang

Routinely collected data from critical care units at Zigong Fourth People’s Hospital, Sichuan, China for patients admitted between January 2019 and December 2020 Missing information on temperature are updated in the new version.

Published: June 30, 2022. Version: 1.1

Database Credentialed Access

DrugEHRQA: A Question Answering Dataset on Structured and Unstructured Electronic Health Records For Medicine Related Queries

Jayetri Bardhan, Anthony Colas, Kirk Roberts, Daisy Zhe Wang

DrugEHRQA is a QA dataset containing question-answers from MIMIC-III tables and discharge summaries.

question-answer qa

Published: April 12, 2022. Version: 1.0.0

Database Credentialed Access

Synthetic Acute Hypotension and Sepsis Datasets Based on MIMIC-III and Published as Part of the Health Gym Project

Nicholas Kuo, Simon Finfer, Louisa Jorm, Sebastiano Barbieri

This repository hosts the original Health Gym datasets of Acute Hypotension and Sepsis

sepsis acute hypotension synthetic dataset generative modelling wasserstein generative adversarial network reinforcement learning machine learning

Published: Feb. 23, 2022. Version: 1.0.0

Database Credentialed Access

CLIP: A Dataset for Extracting Action Items for Physicians from Hospital Discharge Notes

James Mullenbach, Yada Pruksachatkun, Sean Adler, Jennifer Seale, Jordan Swartz, T Greg McKelvey, Yi Yang, David Sontag

Clinical action items annotated over MIMIC-III. 718 discharge summaries are labeled at a sentence- and character-level with multiple action labels including Appointment, Lab, Procedure, Medication, Imaging, Patient Instructions, and Other.

Published: June 21, 2021. Version: 1.0.0