Resources
70 results for "clinical annotation"
Model
Credentialed Access
RadVLM model
We present RadVLM, a compact (7B) multitask conversational foundation model designed for CXR interpretation. Its development relies on the curation of a large-scale instruction dataset comprising over 1 million image-instruction pairs containing bot…
Database
Open Access
PTB-XL, a large publicly available electrocardiography dataset
Electrocardiography (ECG) is a key diagnostic tool to assess the cardiac condition of a patient. Automatic ECG interpretation algorithms as diagnosis support systems promise large reliefs for the medical personnel - only on the basis of the number o…
Database
Credentialed Access
MedDec: Medical Decisions for Discharge Summaries in the MIMIC-III Database
Medical decisions directly impact individuals’ health and well-being. Extracting decision spans from clinical notes plays a crucial role in understanding medical decision-making processes. The MedDec dataset includes expert-annotated decisions of te…
Database
Credentialed Access
Annotated Social Determinants of Health Dataset for Adverse Pregnancy Outcomes
This project presents an annotated dataset derived from MIMIC-III and MIMIC-IV discharge summaries, focusing on key Social Determinants of Health (SDoH) factors—social support, occupation, and substance use—and their association with adverse pregnan…
Database
Credentialed Access
Annotated MIMIC-IV discharge summaries for a study on deidentification of names
We introduce a dataset of people’s names and clinical note templates to support research on the demographic bias of de-identification systems. The dataset contains 16 name sets that vary along four demographic dimensions: gender, race, name populari…
Database
Credentialed Access
RadGraph: Extracting Clinical Entities and Relations from Radiology Reports
RadGraph is a dataset of entities and relations in full-text radiology reports. We designed a novel information extraction (IE) schema to structure clinical information in a radiology report with four entities and three relations. Our train set cons…
Challenge
Credentialed Access
SNOMED CT Entity Linking Challenge
This challenge, sponsored by SNOMED International, seeks to advance the development of Entity Linking models that operate on unstructured clinical texts. Participants in the challenge will train entity linking models using a subset of MIMIC-IV-Note …
Database
Restricted Access
VinDr-SpineXR: A large annotated medical image dataset for spinal lesions detection and classification from radiographs
Radiographs are used as the most critical imaging tool for identifying spine anomalies in clinical practice [1]. The evaluation of spinal bone lesions, however, is a challenging task for radiologists. To the best of our knowledge, no existing studie…
Database
Credentialed Access
Immunosuppressive Condition and Medication Annotations for Admission Notes in the MIMIC-III Database
Immunosuppression due to underlying conditions or immunosuppressive medication use increases the risk of morbidity and mortality in the context of infectious disease. Identifying patients with immunosuppression is important for better studying and u…
Database
Open Access
Hillel Yaffe Glaucoma Dataset (HYGD): A Gold-Standard Annotated Fundus Dataset for Glaucoma Detection
Glaucomatous optic neuropathy (GON) is a leading cause of irreversible blindness worldwide, affecting an estimated 64.3 million people globally with projections reaching 111.8 million by 2040. Approximately 50% of cases remain undiagnosed until adva…