Resources


Database Credentialed Access

CLIP: A Dataset for Extracting Action Items for Physicians from Hospital Discharge Notes

James Mullenbach, Yada Pruksachatkun, Sean Adler, et al.

Clinical action items annotated over MIMIC-III. 718 discharge summaries are labeled at a sentence- and character-level with multiple action labels including Appointment, Lab, Procedure, Medication, Imaging, Patient Instructions, and Other.

Published: June 21, 2021. Version: 1.0.0

Database Credentialed Access

RadGraph: Extracting Clinical Entities and Relations from Radiology Reports

Saahil Jain, Ashwin Agrawal, Adriel Saporta, et al.

RadGraph is a dataset of entities and relations in full-text chest X-ray radiology reports, which are obtained using a novel information extraction (IE) schema to capture clinically relevant information in a radiology report.

entity and relation extraction graph multi-modal natural language processing radiology

Published: June 3, 2021. Version: 1.0.0

Database Credentialed Access

MIMIC-III-Ext-Notes

Darren Liu, Monique Bouvier, Delgersuren Bold, et al.

We evaluated general large language models' performance in clinical information extraction on MIMIC-III notes.

Published: Feb. 27, 2026. Version: 1.0.0

Database Open Access

VitalDB Arrhythmia Database: An Anesthesiologist-Validated Large-Scale Intraoperative Arrhythmia Dataset with Beat and Rhythm Labels

Dain Eun, Kayoung Shim, Hyunsoo Lee, et al.

We present a comprehensive intraoperative arrhythmia dataset with 734,528 seconds of ECG recordings from 482 patients, featuring over 660,000 beats annotated and validated by five anesthesiologists.

ppg vitaldb ecg arterial waveform intraoperative dataset

Published: Feb. 26, 2026. Version: 1.0.0

Database Credentialed Access

Lunguage: A Benchmark for Structured and Sequential Chest X-ray Interpretation

Jong Hak Moon, Geon Choi, Paloma Rabaey, et al.

A radiologist-annotated benchmark of structured chest X-ray reports at single and sequential levels, comprising 1,473 reports across 18 relation types and 80 longitudinal cases.

fine-grained structured reports attribute-level clinical reasoning medical text structuring longitudinal clinical reasoning chest x-ray report parsing medical information structuring benchmark dataset for radiology report medical information extraction structured radiology reports temporal relation extraction radiology report benchmarking longitudinal clinical understanding

Published: Jan. 11, 2026. Version: 1.0.0

Database Credentialed Access

PIFIR: PET-CT Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jeremy Ong, et al.

A corpus of PET-CT reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.

nlp clinical documentation information extraction invasive fungal infections

Published: Feb. 27, 2025. Version: 1.0.0

Database Credentialed Access

FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark

Mingjie Li, Wenjia Cai, Rui Liu, et al.

Benchmark dataset for report generation based on fundus fluorescein angiography images and reports.

fundus fluorescein angiography medical report generation vision and language explainable and reliable evaluation

Published: Jan. 21, 2025. Version: 1.1.0

Database Credentialed Access

MedDec: Medical Decisions for Discharge Summaries in the MIMIC-III Database

Mohamed Elgaar, Jiali Cheng, Nidhi Vakil, et al.

Annotations of ten types of medical decisions from discharge summaries in the MIMIC-III database.

natural language processing medical decisions span classification discharge summary mimic

Published: Oct. 16, 2024. Version: 1.0.0

Database Open Access

VTaC: A Benchmark Dataset of Ventricular Tachycardia Alarms from ICU Monitors

Li-wei Lehman, Benjamin Moody, Lucas McCullum, et al.

VTaC is an annotated ventricular tachycardia (VT) arrhythmia alarm database containing over 5,000 waveform recordings with VT alarms from ICU monitors, with each alarm labeled as either true or false by at least two human expert annotators.

arrhythmia machine learning icu false alarms benchmark dataset ventricular tachycardia

Published: Oct. 1, 2024. Version: 1.0

Visualize waveforms

Database Credentialed Access

CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jasmine Teng, et al.

A corpus of cytology and histopathology reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.

nlp clinical documentation information extraction invasive fungal infections

Published: Feb. 20, 2024. Version: 1.0.2