Resources


Database Credentialed Access

CXR-PRO: MIMIC-CXR with Prior References Omitted

Vignav Ramesh, Nathan Chi, Pranav Rajpurkar

CXR-PRO is an adaptation of the MIMIC-CXR dataset (consisting of chest radiographs and their associated free-text radiology reports) with references to non-existent priors removed.

generation free-text radiology reports references to priors retrieval large language models

Published: Nov. 23, 2022. Version: 1.0.0

Challenge Credentialed Access

ArchEHR-QA: A Dataset for Addressing Patient's Information Needs related to Clinical Course of Hospitalization

Sarvesh Soni, Dina Demner-Fushman

A dataset for grounded question answering (QA) from electronic health records (EHRs).

question answering electronic health record patient portals clinicians

Published: Jan. 1, 2026. Version: 1.3

Model Credentialed Access

RadVLM model

Nicolas Deperrois, Hidetoshi Matsuo, Samuel Ruiperez-Campillo, et al.

RadVLM is a 7B-parameter vision-language model fine-tuned on public chest-X-ray data that drafts reports, lists abnormalities, grounds findings, and chats about a CXR through a single image-to-text interface.

Published: Oct. 8, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-ECHO-Ext-MIMICEchoQA: A Benchmark Dataset for Echocardiogram-Based Visual Question Answering

Rahul Thapa, Andrew Li, Qingyang Wu, et al.

We present MIMICEchoQA, a benchmark dataset for echocardiogram-based question answering, built from the publicly available MIMIC-IV-ECHO database.

Published: Oct. 7, 2025. Version: 1.0.0

Database Credentialed Access

RadVLM Instruction Dataset

Nicolas Deperrois, Hidetoshi Matsuo, Samuel Ruiperez-Campillo, et al.

This dataset is designed to construct RadVLM, a vision–language model for chest X-ray interpretation. It includes instruction data for tasks such as report generation, abnormality detection, and region grounding, and multitask conversation.

chest x-rays vision-language models medical ai

Published: Sept. 25, 2025. Version: 1.0.0

Database Restricted Access

MIMIC-IV-Ext-Apixaban-Trial-Criteria-Questions

Elizabeth Woo, Michael Craig Burkhart, Emily Alsentzer, et al.

We created 23 questions resembling eligibility criteria from the apixaban clinical trial and evaluated them on a random sample of 100 patient notes from MIMIC-IV. We release the 2300 total question-answer pairs as a dataset here.

clinical q and a evaluation set clinical trial eligibility

Published: April 30, 2025. Version: 1.0.0

Database Credentialed Access

Symile-MIMIC: a multimodal clinical dataset of chest X-rays, electrocardiograms, and blood labs from MIMIC-IV

Adriel Saporta, Aahlad Manas Puli, Mark Goldstein, et al.

A multimodal clinical dataset consisting of CXRs, ECGs, and blood labs, designed to evaluate Symile, a simple contrastive loss that accommodates any number of modalities and allows any model to produce representations for each modality.

database cxr ecg chest x-ray contrastive learning model multimodal mimic electrocardiogram

Published: Jan. 28, 2025. Version: 1.0.0

Challenge Credentialed Access

BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization

Yanjun Gao, Dmitriy Dligach, Timothy Miller, et al.

This is the data storage for BioNLP Workshop Shared Task 1A: Problem List Summarization.

bionlp clinical natural language processing electronic health record summarization

Published: Nov. 12, 2023. Version: 2.0.0

Database Credentialed Access

Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization

Yanjun Gao, John Caskey, Timothy Miller, et al.

We introduce a hierarchical annotation suite of tasks addressing clinical text understanding, reasoning and abstraction over evidence, and diagnosis summarization. One task is section tagging major section and the other task is diagnosis generation.

Published: Sept. 30, 2022. Version: 1.0.0

Database Credentialed Access

Critical care database comprising patients with infection at Zigong Fourth People's Hospital

Ping Xu, Lin Chen, Zhongheng Zhang

Routinely collected data from critical care units at Zigong Fourth People’s Hospital, Sichuan, China for patients admitted between January 2019 and December 2020 Missing information on temperature are updated in the new version.

Published: June 30, 2022. Version: 1.1