Resources


Challenge Credentialed Access

ArchEHR-QA: A Dataset for Addressing Patient's Information Needs related to Clinical Course of Hospitalization

Sarvesh Soni, Dina Demner-Fushman

A dataset for grounded question answering (QA) from electronic health records (EHRs).

question answering electronic health record patient portals clinicians

Published: Jan. 1, 2026. Version: 1.3

Database Credentialed Access

BOLD, a blood-gas and oximetry linked dataset

João Matos, Tristan Struja, Jack Gallifant, et al.

An open-source pulse oximetry and arterial blood gas dataset, derived from MIMIC-III, MIMIC-IV, and eICU-CRD

pulse oximetry intensive care unit health equity electronic health records

Published: Nov. 8, 2023. Version: 1.0

Database Open Access

The CirCor DigiScope Phonocardiogram Dataset

Jorge Oliveira, Francesco Renna, Paulo Costa, et al.

A large collection of multi-location heart sound signals, with 5272 records collected from 1568 subjects. Heart murmurs have been annotated by a human annotator based on their time, shape, pitch, grading, quality, location and location intensity.

signal processing murmur pitch george b moody physionet challenge 2022 murmur grading murmur location murmur timing phonocardiogram pregnant murmur shape pediatric murmur detection murmur intensity murmur quality

Published: May 10, 2022. Version: 1.0.3

Visualize waveforms

Database Credentialed Access

ODD: A Benchmark Dataset for the NLP-based Opioid Related Aberrant Behavior Detection

Sunjae Kwon, Xun Wang, Weisong Liu, et al.

Opioid-related aberrant behaviors (ORABs) detection Dataset (ODD) which is a large-size, expert-annotated, and multi-label classification benchmark dataset corresponding to the task

substance use natural language processing opioid related aberrant behavior

Published: Jan. 11, 2024. Version: 1.0.0

Database Open Access

Minute level step counts and physical activity data from the National Health and Nutrition Examination Survey (NHANES) 2011-2014

Lily Koffman, John Muschelli

Minute level step counts obtained from five step counting algorithms for raw accelerometry data, and minute level Activity Counts, MIMS, wear predictions, and wear flags for all participants who wore accelerometers in NHANES 2011-2014.

accelerometry physical activity steps nhanes

Published: May 5, 2025. Version: 1.0.1

Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, et al.

Chest radiographs in DICOM format with associated free-text reports.

chest x-rays computer vision natural language processing machine learning radiology mimic

Published: July 23, 2024. Version: 2.1.0

Database Open Access

Clinical data from the MIMIC-II database for a case study on indwelling arterial catheters

Jesse Raffa

Dataset extracted from MIMIC-II for a tutorial on effectiveness of indwelling arterial catheters in hemodynamically stable patients with respiratory failure for mortality outcomes.

Published: Oct. 28, 2016. Version: 1.0

Database Restricted Access

DREAMT: Dataset for Real-time sleep stage EstimAtion using Multisensor wearable Technology

Ke Wang, Jiamu Yang, Ayush Shetty, et al.

We present high resolution wearable device multichannel data along with clinical labeled and recorded sleep stage and polysomnography (PSG) data from 100 sleep abnormal patients with sleep apnea.

wearable sleep disorders biomedical time series classification

Published: April 30, 2025. Version: 2.1.0

Database Open Access

CGMacros: a scientific dataset for personalized nutrition and diet monitoring

Ricardo Gutierrez-Osuna, David Kerr, Bobak Mortazavi, et al.

CGMacros contains information from two continuous glucose monitors (CGM), food macronutrients, food photographs, physical activity, and anonymized participant demographics, anthropometric measurements and health parameters.

diabetes machine learning continuous glucose monitors obesity postprandial glucose response food macronutrients metabolic models food photographs personalized nutrition

Published: Jan. 28, 2025. Version: 1.0.0

Database Credentialed Access

Annotated Social Determinants of Health Dataset for Adverse Pregnancy Outcomes

Nidhi Soley, MaKhaila Bentil, Jash Shah, et al.

This project provides a manually annotated dataset of social determinants of health—social support, occupation, and substance use—linked to pregnancy outcomes, extracted from MIMIC-III and MIMIC-IV discharge summary notes.

Published: Aug. 4, 2025. Version: 1.0.0