Resources


Database Restricted Access

Application of Med-PaLM 2 in the refinement of MIMIC-CXR labels

Kendall Park, Rory Sayres, Andrew Sellergren, Tom Pollard, Fayaz Jamil, Timo Kohlberger, Charles Lau, Atilla Kiraly

This work further refines the labels associated with CheXpert in MIMIC-CXR-JPG 2.0.0 by filtering with Med-PaLM 2 followed by verification by manual review by three US board-certified radiologists.

mimic-cxr labels

Published: Feb. 4, 2025. Version: 1.0.0

Database Credentialed Access

Northwestern ICU (NWICU) database

Dana Moukheiber, William Temps, Bhadrappa Molgi, Yikuan Li, Alice Lu, Prasanth Nannapaneni, Abdulrahman Chahin, Sicheng Hao, Felipe Torres Fabregas, Leo Anthony Celi, Adrian Wong, Maxwell Lloyd, Xavier Borrat Frigola, Hyung-Chul Lee, Daniel Schneider, Tom Pollard, Yuan Luo, Abel Kho, Roger Mark

A freely available COVID-rich ICU database comprising de-identified health-related data from Northwestern Memorial Health Center (NHMC).

Published: Nov. 19, 2024. Version: 0.1.0

Model Credentialed Access

Asclepius-R : Clinical Large Language Model Built On MIMIC-III Discharge Summaries

Sunjun Kweon, Junu Kim, Jiyoun Kim, Sujeong Im, Eunbyeol Cho, Seongsu Bae, Jungwoo Oh, Gyubok Lee, Jong Hak Moon, Seng Chan You, Seungjin Baek, Chang Hoon Han, Yoon Bin Jung, Yohan Jo, Edward Choi

Asclepius: Publicly Available Clinical Large Language Models with Synthetic Clinical Notes Asclepius-R: A instruction-finetuned large language model with MIMIC-III clinical notes

clinical notes synthetic clinical notes synthetic notes asclepius open-source llm clinical llm large language model

Published: March 25, 2024. Version: 1.1.0

Database Open Access

Patient-level dataset to study the effect of COVID-19 in people with Multiple Sclerosis

Hamza Khan, Lotte Geys, peer baneke, Giancarlo Comi, Liesbet Peeters

This dataset is part of the Global Data Sharing Initiative. The data was acquired by people with MS and clinicians using a fast data entry tool. The dataset includes demographics, comorbidities and hospital stay and COVID-19 symptoms of PwMS.

Published: Jan. 2, 2024. Version: 1.0.1

Database Open Access

PTB-XL+, a comprehensive electrocardiographic feature dataset

Nils Strodthoff, Temesgen Mehari, Claudia Nagel, Philip Aston, Ashish Sundar, Claus Graff, Jørgen Kanters, Wilhelm Haverkamp, Olaf Doessel, Axel Loewe, Markus Bär, Tobias Schaeffter

ECG feature dataset accompanying the PTB-XL ECG dataset

ptb-xl ptb ecg electrocardiography

Published: June 27, 2023. Version: 1.0.1

Visualize waveforms

Database Credentialed Access

MIMIC-III and eICU-CRD: Feature Representation by FIDDLE Preprocessing

Shengpu Tang, Parmida Davarmanesh, Yanmeng Song, Danai Koutra, Michael Sjoding, Jenna Wiens

Features and labels from MIMIC-III and eICU-CRD produced by FIDDLE, an EHR preprocessing pipeline.

preprocessing electronic health record machine learning

Published: April 28, 2021. Version: 1.0.0

Software Open Access

Waveform Database Software Package (WFDB) for MATLAB and Octave

Ikaro Silva, Benjamin Moody, George Moody

Tools for working with waveforms in MATLAB.

Published: April 5, 2021. Version: 0.10.0

Challenge Restricted Access

WiDS (Women in Data Science) Datathon 2020: ICU Mortality Prediction

Meredith Lee, Jesse Raffa, Marzyeh Ghassemi, Tom Pollard, Sharada Kalanidhi, Omar Badawi, Karen Matthys, Leo Anthony Celi

WiDS (Women in Data Science) Datathon 2020: ICU Mortality Prediction focuses on patient health. Join a team, explore the data, and share your insights: http://bit.ly/WiDSdatathon2020

mortality risk data science kaggle icu challenge predictive analytics women in data science

Published: Jan. 22, 2020. Version: 1.0.0

Database Open Access

PhysioZoo - mammalian NSR databases

Ori Shemla, Joachim Behar

PhysioZoo is a collaborative platform dedicated to the study of the heart rate variability in electrophysiological recordings from mammals

heart rate variabillity electrophysiology mammals ecg

Published: Aug. 27, 2019. Version: 1.0.0

Visualize waveforms

Software Open Access

PhysioNet Cardiovascular Signal Toolbox

The PhysioNet Cardiovascular Signal Toolbox is an open-source modular program for calculating heart rate variability (HRV) implemented in Matlab with evidence-based algorithms and output formats. The Toolbox is compatible with 64-bit MATLAB on GNU/L…

cardiovascular heart rate variability

Published: April 28, 2018. Version: 1.0.0