Resources


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EHRXQA: A Multi-Modal Question Answering Dataset for Electronic Health Records with Chest X-ray Images

Seongsu Bae, Daeun Kyung, Jaehee Ryu, et al.

We present EHRXQA, the first multi-modal EHR QA dataset combining structured patient records with aligned chest X-ray images. EHRXQA contains a comprehensive set of QA pairs covering image-related, table-related, and image+table-related questions.

question answering electronic health records evaluation chest x-ray multi-modal question answering ehr question answering semantic parsing benchmark visual question answering deep learning machine learning

Published: July 23, 2024. Version: 1.0.0

Database Credentialed Access

CXR-Align: A Benchmark for CXR-Report Alignment with Negations

Hanbin Ko

CXR-Align is a benchmark dataset created to evaluate vision-language models' capability to interpret negations in chest X-ray (CXR) reports, featuring systematically modified reports from MIMIC-CXR.

Published: Aug. 21, 2025. Version: 1.0.0

Database Credentialed Access

EHR-DS-QA: A Synthetic QA Dataset Derived from Medical Discharge Summaries for Enhanced Medical Information Retrieval Systems

Konstantin Kotschenreuther

Dataset consisting of question and answer pairs synthetically generated from medical discharge summaries, designed to facilitate the training and development of large language models specifically tailored for healthcare applications

mimic-iv clinical question-answering medical discharge summaries large language models

Published: Jan. 11, 2024. Version: 1.0.0

Database Credentialed Access

MedVAL-Bench: Expert-Annotated Medical Text Validation Benchmark

Asad Aali, Vasiliki Bikia, Maya Varma, et al.

MedVAL-Bench is the first large-scale physician-validated benchmark for medical text validation, spanning 6 diverse medical tasks and containing 840 language model-generated outputs annotated by 12 physicians with error assessments and risk grades.

Published: Nov. 14, 2025. Version: 1.0.1

Database Credentialed Access

MIMIC-IV-Ext Clinical Decision Making: A MIMIC-IV Derived Dataset for Evaluation of Large Language Models on the Task of Clinical Decision Making for Abdominal Pathologies

Paul Hager, Friederike Jungmann, Daniel Rueckert

A curated set of ED clinical decision making cases for four abdominal pathologies. Each case contains the exams required to diagnose including HPI, physical examination, laboratory tests, and imaging. Relevant treatment information is also included.

clinical decision making abdominal pathologies treatment plan emergency room diagnosis large language models

Published: July 8, 2024. Version: 1.1

Database Credentialed Access

MIMIC-IV-Ext-CLIF: MIMIC-IV in the Common Longitudinal ICU data Format (CLIF)

Zewei Liao, Shan Guleria, Kevin Smith, et al.

Transforming the MIMIC-IV 3.1 database into the Common Longitudinal ICU data Format (CLIF)

critical care mimic clif the common longitudinal icu data format

Published: March 23, 2026. Version: 1.1.0

Database Credentialed Access

MIMIC-III Clinical Database

Alistair Johnson, Tom Pollard, Roger Mark

MIMIC-III is a large, freely-available database comprising deidentified health-related data associated with over forty thousand patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012. The databas…

clinical critical care natural language processing intensive care machine learning

Published: Sept. 4, 2016. Version: 1.4

Database Credentialed Access

Paediatric Intensive Care database

Haomin Li, Xian Zeng, Gang Yu

PIC (Paediatric Intensive Care) is a large paediatric-specific, single-centre, bilingual database comprising information relating to children admitted to critical care units at a large children’s hospital in China.

pediatrics critical care natural language processing intensive care

Published: Nov. 12, 2020. Version: 1.1.0

Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, et al.

Chest radiographs in DICOM format with associated free-text reports.

chest x-rays computer vision natural language processing radiology mimic machine learning

Published: July 23, 2024. Version: 2.1.0

Database Credentialed Access

MIMIC-Ext-DrugDetection

Fabrice Harel-Canada, Nanyun Peng, David Goodman, et al.

This project offers a multilabel annotated dataset of clinical note sentences from MIMIC-III/IV for substance use detection. It supports NLP research for identifying various co-occurring drug use mentions in patient records.

ehr mimic-iv substance use clinical notes mimic-iii methamphetamine multi-label cocaine drug detection polysubstance use prescription opioid misuse cannabis benzodiazepine misuse injection drug use heroin

Published: Sept. 25, 2025. Version: 1.0.0