Resources

37 results for "clinical information extraction"

Database Credentialed Access

EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries

Sunjun Kweon, Jiyoun Kim, Heeyoung Kwak, et al.

Discharge summaries in Electronic Health Records (EHRs) are crucial for clinical decision-making, but their length and complexity make information extraction challenging, especially when dealing with accumulated summaries across multiple patient adm…
Published: June 26, 2024. Version: 1.0.1
Database Credentialed Access

Bridge2AI-Voice: An ethically-sourced, diverse voice dataset linked to health information

Yael Bensoussan, Alexandros Sigaras, Anais Rameau, et al.

The human voice contains complex acoustic markers which have been linked to important health conditions including dementia, mood disorders, and cancer. When viewed as a biomarker, voice is a promising characteristic to measure as it is simple to col…
Published: Oct. 19, 2026. Version: 4.0.0
Database Credentialed Access

Bridge2AI-Voice Pediatric Dataset

Yael Bensoussan, Alexandros Sigaras, Anais Rameau, et al.

The human voice contains complex acoustic markers which have been linked to important health conditions including dementia, mood disorders, and cancer. When viewed as a biomarker, voice is a promising characteristic to measure as it is simple to col…
Published: Oct. 19, 2026. Version: 2.0.0
Database Credentialed Access

RadGraph2: Tracking Findings Over Time in Radiology Reports

Adam Dejl, Sameer Khanna, Patricia Therese Pile, et al.

RadGraph2 is a dataset of 800 chest radiology reports annotated using a fine-grained entity-relationship schema, which is an expanded version of the previously introduced RadGraph dataset. In contrast with the previous approaches and the original Ra…
Published: Aug. 8, 2024. Version: 1.0.0
Database Credentialed Access

PIFIR: PET-CT Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jeremy Ong, et al.

Surveillance of invasive fungal infection (IFI) in clinical settings is a laborious process requiring a detailed review of patient medical history. One of the key sources of clinical information is imaging reports: radiologist-produced free-text rep…
Published: Feb. 27, 2025. Version: 1.0.0
Database Credentialed Access

CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jasmine Teng, et al.

Surveillance of invasive fungal infection (IFI) in clinical settings is a laborious process requiring a detailed review of patient medical history. One of the key sources of clinical information is cytology and histopathology reports: pathologist-pr…
Published: Feb. 20, 2024. Version: 1.0.2
Database Credentialed Access

RadGraph-XL: A Large-Scale Expert-Annotated Dataset for Entity and Relation Extraction from Radiology Reports

Jean-Benoit Delbrouck

Radiology reports are essential for clinical care but pose challenges for automated processing due to their unstructured nature. Existing datasets like RadGraph-1.0 focus narrowly on chest X-rays (CXR), limiting their applicability. We introduce Rad…
Published: Sept. 12, 2025. Version: 1.0.0
Database Credentialed Access

MIMIC-IV-Ext MIMIC Note Extract: A Large-Scale Structured Dataset Extracted from MIMIC-IV-Note Discharge Summaries

Jonas Kuntzer, Kristian Schwethelm, Conrad Ketzer, et al.

MIMIC is one of the most widely used public hospital datasets for machine learning on electronic health records [3], but its structured tables answer many clinical questions only through coded surrogates, or not at all. For example, a patient's past…
Published: Oct. 21, 2026. Version: 1.0
Model Credentialed Access

Shareable Artificial Intelligence to Extract Cancer Outcomes from Electronic Health Records for Precision Oncology Research

Kenneth Kehl, Pavel Trukhanov, Christopher Fong, et al.

Databases that link molecular data to clinical outcomes can inform precision cancer research into novel prognostic and predictive biomarkers. However, outside of clinical trials, cancer outcomes are typically recorded only in text form within electr…
Published: Oct. 24, 2024. Version: 1.0.0
Database Restricted Access

Swiss-Mammo: A physician-written, synthetic dataset of German mammography reports

Daniel Reichenpfader, Sandro von Däniken, Harald Marcel Bonel

This dataset, Swiss-Mammo, contains 28 manually constructed German mammography reports, each paired with an English translation. The reports are stratified across BI-RADS categories 0 through 6, with four reports per category. All reports were manua…
Published: June 24, 2025. Version: 1.0.1