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500 resources
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LATTE-CXR: Locally Aligned TexT and imagE, Explainable dataset for Chest X-Rays
This dataset includes bounding box-statement pairs for chest X-ray images, derived from radiologists’ eye-tracking data (for explainability) and annotations, for local visual-language models.
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Application of Med-PaLM 2 in the refinement of MIMIC-CXR labels
This work further refines the labels associated with CheXpert in MIMIC-CXR-JPG 2.0.0 by filtering with Med-PaLM 2 followed by verification by manual review by three US board-certified radiologists.
Database
Credentialed Access
MIMIC-IV-Ext-BHC: Labeled Clinical Notes Dataset for Hospital Course Summarization
This dataset presents a collection of preprocessed and labeled clinical notes derived from "MIMIC-IV-Note", and aims to facilitate the development of ML models focused on summarizing brief hospital courses (BHC) from clinical notes.
Database
Open Access
Synthetic Mention Corpora for Disease Entity Recognition and Normalization
We present the Synthetic Mention Corpora for Disease Entity Recognition and Normalization, containing 128000 disease mentions from the UMLS disorder group, generated by an LLM. This corpus aims to improve these tasks in biomedical and clinical texts.
Database
Credentialed Access
Medical-Diff-VQA: A Large-Scale Medical Dataset for Difference Visual Question Answering on Chest X-Ray Images
MIMIC-Diff-VQA provides a large-scale dataset for Difference visual question answering in medical chest x-ray images.
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CXRGraph: Using Information Extraction to Normalize the Training Data for Automatic Radiology Report Generation
CXRGraph is a structured radiology report dataset built upon RadGraph and tailored for the Automatic Radiology Report Generation task. It can identify more task-relevant information such as abnormalities and hallucinated prior references.
Database
Credentialed Access
Symile-MIMIC: a multimodal clinical dataset of chest X-rays, electrocardiograms, and blood labs from MIMIC-IV
A multimodal clinical dataset consisting of CXRs, ECGs, and blood labs, designed to evaluate Symile, a simple contrastive loss that accommodates any number of modalities and allows any model to produce representations for each modality.
Database
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Visual Question Answering evaluation dataset for MIMIC CXR
This dataset provides 224 VQAs for 40 test set cases, and 111 VQAs for 23 validation set cases of the MIMIC CXR dataset.
Database
Open Access
CGMacros: a scientific dataset for personalized nutrition and diet monitoring
CGMacros contains information from two continuous glucose monitors (CGM), food macronutrients, food photographs, physical activity, and anonymized participant demographics, anthropometric measurements and health parameters.
Database
Credentialed Access
SCRIPT X2B8 Dataset: per-day clinical features to model successful next-day extubation
This dataset contains electronic health record (EHR) data from ICU patients receiving mechanical ventilation, aggregated on a daily basis, along with annotations of intubation, extubation, tracheostomy days, and cases of failed extubation. Data can b