Resources

In this project, the MIMIC-IV demo database was used to create an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) instance. The transformation was built making use of template scripts and concept mappings from a previous pr…

MIMIC-IV-Ext-CLIF is a derived dataset of MIMIC-IV v3.1, transformed into the Common Longitudinal ICU data Format (CLIF). CLIF is an open-source critical care data model developed by a consortium of more than 10 US academic medical centers to standa…

Medical Information Mart for Intensive Care Brazil (MIMIC-BR) is a database of anonymized clinical data from ICU and hospital admissions in Brazil. The dataset format and intended use match the original large, freely available database comprising de…

Breast cancer is one of the most common types of cancer among women, leading to a growing and essential need for early and precise detection. A variety of machine learning techniques have been demonstrating great promise in improving diagnostic accu…

Social determinants of health (SDoH) have an important impact on patient outcomes but are incompletely collected from the electronic health records (EHR). This study researched the ability of large language models to extract SDoH from free text in E…

MIMIC-CXR-DB is a relational clinical database comprising 146,333 chest radiographs linked to hospital admissions, designed to support research at the intersection of electronic health records (EHRs) and chest radiography. The database integrates ho…

Clinical decision making is one of the most impactful parts of a physician's responsibilities and stands to benefit greatly from AI solutions such as large language models (LLMs). However, while many datasets exist to test the performance of AI mode…

This repository contains a de-identified and curated patient-level dataset for modeling the impact of fine-grained environmental and patient-level factors on nosocomial acquisition of a wide range of drug-susceptible and drug-resistant pathogens. Th…