Resources


Database Open Access

Santa Fe Time Series Competition Data Set B

This is a multivariate data set recorded from a patient in the sleep laboratory of the Beth Israel Hospital (now the Beth Israel Deaconess Medical Center) in Boston, Massachusetts. This data set was extracted from record slp60 of the MIT-BIH Polysom…

sleep multiparameter

Published: Jan. 6, 2000. Version: 1.0.0

Database Open Access

MIMIC-IV Clinical Database Demo

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, et al.

An openly available subset of patients in the MIMIC-IV database.

critical care electronic health record mimic

Published: Jan. 31, 2023. Version: 2.2

Database Credentialed Access

C-REACT: Contextualized Race and Ethnicity Annotations for Clinical Text

Oliver Bear Don't Walk IV, Adrienne Pichon, Harry Reyes Nieva, et al.

Two sets of gold-standard annotations for race and ethnicity information from clinical notes in MIMIC-III. Contains race and ethnicity label assignments and related information such as country of origin and spoken language.

clinical notes patient country information race and ethnicity patient language information

Published: Oct. 21, 2024. Version: 1.0.0

Model Credentialed Access

Fine-tuning foundational models to code diagnoses from veterinary health records

Adam Kiehl, Nadia Saklou, G Joseph Strecker, et al.

Fine-tuned GatorTron LLM for veterinary diagnosis coding to 7,739 SNOMED-CT codes based on clinical summary text from the Colorado State University Veterinary Teaching Hospital.

transformers natural language processing large language models foundational models one health diagnoses snomed-ct veterinary medicine omop cdm veterinary medical records clinical coding

Published: Jan. 25, 2026. Version: 1.0.0

Database Credentialed Access

CXR-PRO: MIMIC-CXR with Prior References Omitted

Vignav Ramesh, Nathan Chi, Pranav Rajpurkar

CXR-PRO is an adaptation of the MIMIC-CXR dataset (consisting of chest radiographs and their associated free-text radiology reports) with references to non-existent priors removed.

generation free-text radiology reports references to priors retrieval large language models

Published: Nov. 23, 2022. Version: 1.0.0

Database Credentialed Access

CLIP: A Dataset for Extracting Action Items for Physicians from Hospital Discharge Notes

James Mullenbach, Yada Pruksachatkun, Sean Adler, et al.

Clinical action items annotated over MIMIC-III. 718 discharge summaries are labeled at a sentence- and character-level with multiple action labels including Appointment, Lab, Procedure, Medication, Imaging, Patient Instructions, and Other.

Published: June 21, 2021. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext-BHC: Labeled Clinical Notes Dataset for Hospital Course Summarization

Asad Aali, Dave Van Veen, Yamin Arefeen, et al.

This dataset presents a collection of preprocessed and labeled clinical notes derived from "MIMIC-IV-Note", and aims to facilitate the development of ML models focused on summarizing brief hospital courses (BHC) from clinical notes.

natural language processing clinical notes brief hospital course text summarization machine learning

Published: Feb. 3, 2025. Version: 1.2.0

Database Open Access

MIMIC-III Clinical Database Demo

Alistair Johnson, Tom Pollard, Roger Mark

An open source demo of the MIMIC-III Clinical Database

critical care electronic health records mimic

Published: April 24, 2019. Version: 1.4

Database Credentialed Access

Establishment of a Chinese critical care database from electronic healthcare records in a tertiary care medical center

Senjun Jin, Lin Chen, Kun Chen, et al.

Chinese critical care database from electronic healthcare records in a tertiary care medical center

china database critical care

Published: Jan. 19, 2023. Version: 1.0

Database Credentialed Access

Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries

Melissa Poulsen, Vanessa Troiani, Philip Freda, et al.

The database contains a corpus of annotated data from the MIMIC-III Critical Care Database from a study that aimed to develop and apply an annotation schema to characterize opioid use disorder and related contextual factors.

opioid use disorder substance use natural language processing clinical notes

Published: Feb. 8, 2023. Version: 1.0.0