Resources
47 results for "code"
Database
Credentialed Access
Annotated Social Determinants of Health Dataset for Adverse Pregnancy Outcomes
This project presents an annotated dataset derived from MIMIC-III and MIMIC-IV discharge summaries, focusing on key Social Determinants of Health (SDoH) factors—social support, occupation, and substance use—and their association with adverse pregnan…
Database
Credentialed Access
Symile-MIMIC: a multimodal clinical dataset of chest X-rays, electrocardiograms, and blood labs from MIMIC-IV
Symile-MIMIC is a multimodal clinical dataset derived from MIMIC-IV and MIMIC-CXR, consisting of chest X-rays (CXRs), electrocardiograms (ECGs), and blood laboratory tests. It was developed to evaluate Symile, a contrastive learning objective design…
Database
Credentialed Access
MIMIC-IV on FHIR
Fast Healthcare Interoperability Resources (FHIR) has emerged as a robust standard for healthcare data exchange. To explore the use of FHIR for the process of data harmonization, we converted the Medical Information Mart for Intensive Care IV (MIMIC…
Database
Credentialed Access
MIMIC-IV-Ext-MDS-ED: Multimodal Decision Support in the Emergency Department - a Benchmark Dataset for Diagnoses and Deterioration Prediction in Emergency Medicine
Measurable progress in the development of medical decision support systems has been hindered by a lack of comprehensive datasets. Many available datasets focus on narrow prediction tasks and do not include a diverse range of data types, which limits…
Model
Credentialed Access
Asclepius-R : Clinical Large Language Model Built On MIMIC-III Discharge Summaries
The development of large language models tailored for handling patients’ clinical notes is often hindered by the limited accessibility and usability of these notes due to strict privacy regulations. To address these challenges, we first create synth…
Software
Open Access
Software for computing Heart Rate Fragmentation
Heart rate fragmentation (HRF) is a new method for assessing neuroautonomic integrity based on the analysis of short-term (high-frequency [HF]) heart rate dynamics. The code (in AWK) provided here is for the computation of three different metrics, P…
Database
Credentialed Access
EHR-DS-QA: A Synthetic QA Dataset Derived from Medical Discharge Summaries for Enhanced Medical Information Retrieval Systems
This dataset was designed and created to enable advancements in healthcare-focused large language models, particularly in the context of retrieval-augmented clinical question-answering capabilities. Developed using a self-constructed pipeline based …
Database
Credentialed Access
BOLD, a blood-gas and oximetry linked dataset
Pulse oximeters measure peripheral arterial oxygen saturation (SpO2) noninvasively, while the gold standard involves arterial blood gas measurement (SaO2). There are known racial and ethnic disparities in their performance. BOLD is a new comprehensi…
Database
Credentialed Access
Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries
Opioid use disorder (OUD) is underdiagnosed in health system settings, limiting research on OUD using electronic health records (EHRs). Medical encounter notes can enrich structured EHR data with documented signs and symptoms of OUD and social risks…
Database
Restricted Access
Multimodal Physiological Monitoring During Virtual Reality Piloting Tasks
This dataset includes multimodal physiologic, flight performance, and user interaction data streams, collected as participants performed virtual flight tasks of varying difficulty. In virtual reality, individuals flew an "Instrument Landing System" …