Resources


Database Credentialed Access

CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jasmine Teng, et al.

A corpus of cytology and histopathology reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.

nlp clinical documentation information extraction invasive fungal infections

Published: Feb. 20, 2024. Version: 1.0.2

Database Credentialed Access

EchoNotes Structured Database derived from MIMIC-III (ECHO-NOTE2NUM)

Gloria Hyunjung Kwak, Dana Moukheiber, Mira Moukheiber, et al.

A structured echocardiogram database derived from 43,472 observational notes obtained during echocardiogram studies conducted in the intensive care unit at the Beth Israel Deaconess Medical Center between 2001 and 2012.

Published: Feb. 23, 2024. Version: 1.0.0

Database Credentialed Access

MIMIC-Ext-CXR-QBA: A Structured, Tagged, and Localized Visual Question Answering Dataset with Question-Box-Answer Triplets and Scene Graphs for Chest X-ray Images

Philip Müller, Friederike Jungmann, Georgios Kaissis, et al.

We present a large-scale CXR VQA dataset derived from MIMIC-CXR with 42M QA pairs, featuring hierarchical answers, bounding boxes, and structured tags. We generated QA-pairs using LLM-based extraction from radiology reports and localization models.

chest x-rays vqa localization scene graphs

Published: July 22, 2025. Version: 1.0.0

Database Restricted Access

Application of Med-PaLM 2 in the refinement of MIMIC-CXR labels

Kendall Park, Rory Sayres, Andrew Sellergren, et al.

This work further refines the labels associated with CheXpert in MIMIC-CXR-JPG 2.0.0 by filtering with Med-PaLM 2 followed by verification by manual review by three US board-certified radiologists.

mimic-cxr labels

Published: Feb. 4, 2025. Version: 1.0.0

Database Restricted Access

Swiss-Mammo: A physician-written, synthetic dataset of German mammography reports

Daniel Reichenpfader, Sandro von Däniken, Harald Marcel Bonel

Swiss-Mammo: A physician-written, synthetic dataset of 28 German mammography reports. The dataset is stratified based on BI-RADS categories and available in German and English.

radiology mammography structured reporting bi-rads

Published: June 24, 2025. Version: 1.0.1

Database Restricted Access

mcPHASES: A Dataset of Physiological, Hormonal, and Self-reported Events and Symptoms for Menstrual Health Tracking with Wearables

Blue Lin, Jin Yi Li, Kaavya Kalani, et al.

This initial version of the PHASES dataset includes multimodal menstrual health data—hormone levels, wearable sensor metrics, and self-reported symptoms—collected across two study intervals from 42 young adults.

wearables hormones menstrual health multimodal health health sensor data womens health

Published: Sept. 9, 2025. Version: 1.0.0

Database Credentialed Access

EchoGraph-annotated ECHO-NOTE2NUM examples

Chieh-Ju Chao, Mohammad Asadi

EchoGraph is a model that automatically extracts and structures clinical information from echocardiogram reports. The Annotated ECHO-NOTE2NUM Dataset contains MIMIC-III echo reports enhanced with EchoGraph annotations to enhance future research.

Published: Dec. 3, 2025. Version: 1.0.0

Database Restricted Access

Swiss-Mammo: A physician-written, synthetic dataset of German mammography reports

Daniel Reichenpfader, Sandro von Däniken, Harald Marcel Bonel

Swiss-Mammo: A physician-written, synthetic dataset of 28 German mammography reports. The dataset is stratified based on BI-RADS categories and available in German and English.

radiology mammography structured reporting bi-rads

Published: June 24, 2025. Version: 1.0.1

Database Credentialed Access

CXReasonBench: A Benchmark for Evaluating Structured Diagnostic Reasoning in Chest X-rays

Hyungyung Lee, Geon Choi, Jung Oh Lee, et al.

CheXStruct is an automated pipeline that derives structured diagnostic reasoning steps from chest X-rays. CXReasonBench builds on this to evaluate whether models perform clinically grounded, multi-step reasoning beyond final diagnoses.

evaluation chest x-ray benchmark structured chest x-ray qa intermediate reasoning steps structured reasoning grounded reasoning diagnostic reasoning structured diagnostic pipeline

Published: Oct. 23, 2025. Version: 1.0.1

Database Credentialed Access

MIMIC-IV-ECHO-Ext-MIMICEchoQA: A Benchmark Dataset for Echocardiogram-Based Visual Question Answering

Rahul Thapa, Andrew Li, Qingyang Wu, et al.

We present MIMICEchoQA, a benchmark dataset for echocardiogram-based question answering, built from the publicly available MIMIC-IV-ECHO database.

Published: Oct. 7, 2025. Version: 1.0.0