Resources
29 results for "clinical nlp"
Database
Credentialed Access
RadGraph-XL: A Large-Scale Expert-Annotated Dataset for Entity and Relation Extraction from Radiology Reports
Radiology reports are essential for clinical care but pose challenges for automated processing due to their unstructured nature. Existing datasets like RadGraph-1.0 focus narrowly on chest X-rays (CXR), limiting their applicability. We introduce Rad…
Challenge
Credentialed Access
ShAReCLEF eHealth 2013: Natural Language Processing and Information Retrieval for Clinical Care
This is the pilot year of the ShARe/CLEF eHealth Evaluation Lab, a shared task focused on natural language processing (NLP) and information retrieval (IR) for clinical care. The task is co-organized by the Shared Annotated Resources (ShARe) project …
Challenge
Credentialed Access
ShAReCLEF eHealth Evaluation Lab 2014 (Task 2): Disorder Attributes in Clinical Reports
This project focuses on Task 2 of the 2014 ShARe/CLEF eHealth evaluation lab, which extended Task 1 of the 2013 ShARe/CLEF eHealth evaluation lab by focusing on identification and normalization of disorder attributes. The task comprises two subtasks…
Database
Credentialed Access
MIMIC-IV-Ext-BHC: Labeled Clinical Notes Dataset for Hospital Course Summarization
This dataset presents a curated collection of preprocessed and labeled clinical notes derived from the MIMIC-IV-Note database. The primary aim of this resource is to facilitate the development and training of machine learning models focused on summa…
Database
Credentialed Access
Annotated Social Determinants of Health Dataset for Adverse Pregnancy Outcomes
This project presents an annotated dataset derived from MIMIC-III and MIMIC-IV discharge summaries, focusing on key Social Determinants of Health (SDoH) factors—social support, occupation, and substance use—and their association with adverse pregnan…
Database
Restricted Access
Application of Med-PaLM 2 in the refinement of MIMIC-CXR labels
MIMIC-CXR is a large, open source dataset that is widely-used in medical AI research. One of the limitations of this dataset is the lack of ground truth labels for the chest X-ray studies. Prior work has extracted structured labels from the MIMIC-CX…
Model
Credentialed Access
Characterization of Stigmatizing Language in Medical Records
Widespread disparities in clinical outcomes exist between different demographic groups in the United States. A new line of work in medical sociology has demonstrated physicians often use stigmatizing language in electronic medical records within cer…
Database
Credentialed Access
RuMedNLI: A Russian Natural Language Inference Dataset For The Clinical Domain
There is a shortage of text medical resources for the Russian language. This is a substantial obstacle in state-of-the-art NLP deep learning models research and development. To mitigate this issue we translated the MedNLI data from English to Russia…
Model
Credentialed Access
Fine-tuning foundational models to code diagnoses from veterinary health records
Veterinary medical records represent a large data resource for application to veterinary and One Health clinical research efforts. Use of the data is limited by interoperability challenges including inconsistent data formats and data siloing. Clinic…
Database
Credentialed Access
Medication Extraction Labels for MIMIC-IV-Note Clinical Database
This dataset release provides medication extraction labels for a subset of 600 discharge summaries from the 2023 MIMIC-IV-Note dataset. These labels are consistent with the schema from the 2009 i2b2 Workshop on NLP Challenges dataset. We utilized a …