Resources
26 results for "biomedical"
Database
Credentialed Access
ODD: A Benchmark Dataset for the NLP-based Opioid Related Aberrant Behavior Detection
Opioid related aberrant behaviors (ORAB) present novel risk factors for opioid overdose. Previously, ORAB have been mainly assessed by survey results and by monitoring drug administrations. Such methods however, cannot scale up and do not cover the …
Software
Open Access
Transformer-DeID: Deidentification of free-text clinical notes with transformers
Sharing patient data such as clinical notes among clinicians and researchers is fundamental to advancements in clinical practice and biomedical research. Prior to distribution, it is often necessary and legally mandated to remove identifiers such as…
Database
Open Access
Integration of Electroencephalogram and Eye-Gaze Datasets for Performance Evaluation in Fundamentals of Laparoscopic Surgery (FLS) Tasks
Laparoscopic surgery represents a significant advancement in healthcare, aiming to enhance patient outcomes. However, evaluating performance in laparoscopic surgery tasks can be challenging due to subjective assessments. To address this, this study …
Database
Open Access
Electroencephalogram and eye-gaze datasets for robot-assisted surgery performance evaluation
Surgical training and patient safety depend on objective and accurate performance evaluation. Robot-assisted surgery (RAS) is newer and its training less well defined, but resources are not easily accessed to support data collection from participant…
Model
Credentialed Access
EntityBERT: BERT-based Models Pretrained on MIMIC-III with or without Entity-centric Masking Strategy for the Clinical Domain
Transformer-based neural language models have led to breakthroughs for a variety of natural language processing (NLP) tasks. However, most models are pretrained on general domain data. We propose a methodology to produce a model focused on the clini…
Database
Open Access
Brno University of Technology ECG Signal Database with Annotations of P Wave (BUT PDB)
Brno University of Technology ECG Signal Database with Annotations of P Wave (BUT PDB) is an ECG signal database with marked peaks of P waves created by the cardiology team at the Department of Biomedical Engineering, Brno University of Technology. …
Database
Open Access
Brno University of Technology ECG Quality Database (BUT QDB)
BUT QDB is a database created by the cardiology team at the Department of Biomedical Engineering, Brno University of Technology, for the purpose of evaluating ECG quality. The data comprises 18 long-term recordings of single-lead ECGs and associated…
Database
Credentialed Access
MedNLI for Shared Task at ACL BioNLP 2019
Natural Language Inference (NLI) is the task of determining whether a given hypothesis can be inferred from a given premise. Also known as Recognizing Textual Entailment (RTE), this task has enjoyed popularity among researchers for some time. Howeve…
Challenge
Open Access
2018 IEEE BHI and BSN Data Challenge
In collaboration with the IEEE Conference on Biomedical and Health Informatics (BHI) 2018 and the IEEE Conference on Body Sensor Networks (BSN), we are hosting a challenge to explore real clinical questions in critically ill patients using the MIMIC…
Software
Open Access
Data Chromatix
Analysis of biomedical time series plays a key role in clinical management and basic investigation. However, most conventional monitors streaming data in real-time show only the most recent values, not referenced to past dynamics. The proposed visua…