Resources

222 results for "clinical"

Database Credentialed Access

Predictors of Hospital Onset Infection: A Matched Retrospective Cohort Dataset

Ziming Wei, Luke Sagers, Caroline McKenna, et al.

This repository contains a de-identified and curated patient-level dataset for modeling the impact of fine-grained environmental and patient-level factors on nosocomial acquisition of a wide range of drug-susceptible and drug-resistant pathogens. Th…
infection control clinical machine learning infectious diseases hospital onset infection colonization pressure electronic health records
Published: Nov. 4, 2025. Version: 1.0.0
Model Credentialed Access

RadVLM model

Nicolas Deperrois, Hidetoshi Matsuo, Samuel Ruiperez-Campillo, et al.

We present RadVLM, a compact (7B) multitask conversational foundation model designed for CXR interpretation. Its development relies on the curation of a large-scale instruction dataset comprising over 1 million image-instruction pairs containing bot…
Published: Oct. 8, 2025. Version: 1.0.0
Database Credentialed Access

MIMIC-IV-ECHO-Ext-MIMICEchoQA: A Benchmark Dataset for Echocardiogram-Based Visual Question Answering

Rahul Thapa, Andrew Li, Qingyang Wu, et al.

We present MIMICEchoQA, a benchmark dataset for echocardiogram-based question answering, built from the publicly available MIMIC-IV-ECHO database. Each echocardiographic study was paired with the closest discharge summary within a 7-day window, and …
Published: Oct. 7, 2025. Version: 1.0.0
Database Restricted Access

Organ Retrieval and Collection of Health Information for Donation (ORCHID)

Hammaad Adam, Vinith Suriyakumar, Tom Pollard, et al.

There are well-documented inefficiencies and inequities in the current system of deceased donor organ transplantation. While much prior research has focused on designing better allocation systems to distribute donated organs, more can be done to stu…
organ procurement organizations organ transplantation
Published: Sept. 29, 2025. Version: 2.1.1
Database Open Access

MIMIC-IV demo data in the Medical Event Data Standard (MEDS)

Robin Philippus van de Water, Ethan Steinberg, Michael Wornow, et al.

This dataset is an automated ETL conversion of the MIMIC-IV Clinical Database Demo into the Medical Event Data Standard (MEDS). MEDS is a data schema for storing streams of medical events such as those sourced from Electronic Health Records or claim…
ehr critical care electronic health record mimic meds medical event data standard machine learning
Published: Sept. 29, 2025. Version: 0.0.1
Database Credentialed Access

MIMIC-Ext-DrugDetection

Fabrice Harel-Canada, Nanyun Peng, David Goodman, et al.

This project shares a large, annotated drug detection dataset created from MIMIC-III/IV discharge summaries. The dataset was developed to address the challenge of identifying substance use behaviors in Electronic Health Records (EHRs), where critica…
ehr mimic-iv substance use mimic-iii methamphetamine multi-label cocaine drug detection polysubstance use prescription opioid misuse cannabis benzodiazepine misuse injection drug use heroin clinical notes
Published: Sept. 25, 2025. Version: 1.0.0
Database Open Access

Myocardial perfusion scintigraphy image database

Wesley Calixto, Solange Nogueira, Fernanda Luz, et al.

This database provides a collection of myocardial perfusion scintigraphy images in DICOM format with all metadata and segmentations (masks) in NIfTI format. The images were obtained from patients undergoing scintigraphy examinations to investigate c…
nifti anonymization clinical diagnosis myocardial perfusion systems modeling myocardial perfusion scintigraphy metadata ventricular walls coronary artery disease convolutional neural networks automated segmentation dicom artificial intelligence
Published: Sept. 9, 2025. Version: 1.0.0
Database Credentialed Access

MIMIC-IV-Ext-Instr: A Dataset of 450K+ EHR-Grounded Instruction-Following Examples

Zhenbang Wu, Anant Dadu, Mike Nalls, et al.

Large language models (LLMs) have shown impressive capabilities in solving a wide range of tasks based on human instructions. However, developing a conversational AI assistant for electronic health record (EHR) data remains challenging due to the la…
medical question answering instruction tuning large language models
Published: Sept. 9, 2025. Version: 1.0.0
Software Open Access

Vital File Web Viewer: A Browser-Based Tool for Viewing High-Resolution Vital Signs Data

Eunsun Rachel Lee, Hyung-Chul Lee

Vital File Web Viewer is an open-source, browser-based tool for visualizing high-resolution vital signs data stored in the .vital format, commonly used during surgery or intensive care monitoring. The viewer enables seamless access to time-series wa…
vitaldb vital file
Published: Sept. 1, 2025. Version: 1.0.0
Database Credentialed Access

Immunosuppressive Condition and Medication Annotations for Admission Notes in the MIMIC-III Database

Vijeeth Guggilla, Melissa Bak, Mengjia Kang, et al.

Immunosuppression due to underlying conditions or immunosuppressive medication use increases the risk of morbidity and mortality in the context of infectious disease. Identifying patients with immunosuppression is important for better studying and u…
Published: Aug. 4, 2025. Version: 1.0.0