Resources


Database Credentialed Access

Medication Extraction Labels for MIMIC-IV-Note Clinical Database

Akshay Goel, Almog Gueta, Omry Gilon, et al.

Medication extraction NLP labels for 600 discharge summaries in MIMIC-IV-Note dataset.

Published: Dec. 12, 2023. Version: 1.0.0

Model Credentialed Access

Characterization of Stigmatizing Language in Medical Records

Keith Harrigian, Ayah Zirikly, Brant Chee, et al.

A suite of classifiers for detecting three types of stigmatizing language in electronic medical records. Trained on MIMIC-IV discharge notes.

clinical natural language processing domain transfer bias stigmatizing language large language models mimic

Published: Nov. 6, 2023. Version: 1.0.0

Database Open Access

Heart and lung segmentations for MIMIC-CXR/MIMIC-CXR-JPG and Montgomery County TB databases

Benjamin Duvieusart, Felix Krones, Guy Parsons, et al.

Heart and lung segmentations for 200 MIMIC-CXR/MIMIC-CXR-JPG chest x-rays and heart segmentations for 138 Montgomery County tuberculosis chest X-rays.

segmentation heart and lungs montgomery country tb mimic-cxr

Published: Aug. 14, 2023. Version: 1.0.0

Database Restricted Access

MIMIC-Eye: Integrating MIMIC Datasets with REFLACX and Eye Gaze for Multimodal Deep Learning Applications

Chihcheng Hsieh, Chun Ouyang, Jacinto C Nascimento, et al.

MIMIC-Eye: Integrating MIMIC Datasets with REFLACX and Eye Gaze for Multimodal Deep Learning Applications

Published: March 23, 2023. Version: 1.0.0

Database Credentialed Access

MS-CXR-T: Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing

Shruthi Bannur, Stephanie Hyland, Qianchu Liu, et al.

The MS-CXR-T is a multimodal benchmark that enhances the MIMIC-CXR v2 dataset by including expert-verified annotations. Its goal is to evaluate biomedical visual-language processing models in terms of temporal semantics extracted from image and text.

disease progression cxr vision-language processing chest x-ray radiology multimodal

Published: March 17, 2023. Version: 1.0.0

Software Open Access

Waveform Database Software Package (WFDB) for Python

Chen Xie, Lucas McCullum, Alistair Johnson, et al.

Tools for working with waveforms in Python.

waveform wfdb python

Published: Jan. 24, 2023. Version: 4.1.0

Database Open Access

Icentia11k Single Lead Continuous Raw Electrocardiogram Dataset

Shawn Tan, Satya Ortiz-Gagné, Nicolas Beaudoin-Gagnon, et al.

This is a dataset of continuous raw electrocardiogram (ECG) signals for representation learning containing 11 thousand patients and 2 billion labelled beats.

representation learning ecg

Published: April 12, 2022. Version: 1.0

Visualize waveforms

Database Credentialed Access

RuMedNLI: A Russian Natural Language Inference Dataset For The Clinical Domain

Pavel Blinov, Aleksandr Nesterov, Galina Zubkova, et al.

RuMedNLI is the full counterpart dataset of MedNLI in Russian language.

natural language inference recognizing textual entailment russian language

Published: April 1, 2022. Version: 1.0.0

Database Open Access

Pulse Transit Time PPG Dataset

Philip Mehrgardt, Matloob Khushi, Simon Poon, et al.

Time synchronised multi-site PPG dataset for PTT including sensors’ attachment pressures, temperatures, inertial data from accelerometer and gyroscope, annotated ECG data, blood pressures, as well as blood oxygenation saturation levels (SpO2)

blood pressure finger attachment pressure ptt imu spo2 gyroscope attachment force pulse transit time accelerometer ppg ecg

Published: March 18, 2022. Version: 1.1.0

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Database Open Access

Haaglanden Medisch Centrum sleep staging database

Diego Alvarez-Estevez, Roselyne Rijsman

A collection of 151 whole-night PolySomnoGraphic (PSG) sleep recordings from the Haaglanden Medisch Centrum (HMC, The Netherlands) sleep center containing different traces of ExG activity and expert's scorings of sleep stages

edf inter-database generalization sleep staging psg deep learning

Published: March 18, 2022. Version: 1.1

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