Software Open Access

De-Identification Software Package

The deid software package includes code and dictionaries for automated location and removal of protected health information (PHI) in free text from medical records.

anonymization deidentification phi

Published: Dec. 18, 2007. Version: 1.1

Software Open Access

AFVP - A Realistic Ventricular Rhythm Model During AF

AFVP generates a synthesized beat-to-beat interval sequence of ventricular excitations with a realistic structure observed during AF.

simulation interbeat rr interval

Published: Aug. 9, 2007. Version: 1.0.0

Software Open Access

Cardiac Output Estimation from Arterial Blood Pressure Waveforms

This project contains the code used for a study that rigorously compares 11 estimates against thermodilution cardiac output (TCO) using 120 subjects from the MIMIC II database (all subjects for whom multiple TCO measurements were recorded at the tim…

cardiac output estimation

Published: Aug. 2, 2007. Version: 1.0.0

Software Open Access


CVSim is a lumped-parameter model of the human cardiovascular system that has been developed and used for research and for teaching quantitative physiology courses at MIT and Harvard Medical School since 1984. The versions presented here have a grap…

simulation cardiovascular

Published: March 16, 2007. Version: 1.0.0

Software Open Access


The wfdb-swig package provides interfaces between the WFDB library and software written in a variety of other languages, so that such software can have access to the full range of capabilities supported by current and future versions of the WFDB lib…


Published: March 12, 2006. Version: 1.0.0

Software Open Access

Puka - Software for Detection of Breaths in Strain Gauge Recordings

Puka calculates descriptive statistics such as heart rate variability (HRV), peak-valley respiratory sinus arrhythmia (RSA), and respiratory variables from EKG and strain gauge respiration data.

Published: Dec. 15, 2004. Version: 1.0.0

Software Open Access

Sample Entropy Estimation

Sample Entropy is a useful tool for investigating the dynamics of heart rate and other time series. Sample Entropy is the negative natural logarithm of an estimate of the conditional probability that subseries (epochs) of length m that match pointwi…

entropy complexity

Published: Nov. 8, 2004. Version: 1.0.0

Software Open Access

Information-Based Similarity

IBS is a novel method for comparing time series based on linguistic analysis of "word" frequency and rank order statistics. It has been applied successfully in a variety of applications, including analysis of interbeat (RR) intervals, clas…

interbeat rr interval complexity

Published: Oct. 26, 2004. Version: 1.0.0

Software Open Access


The EVAL_ST tool is an open source tool to evaluate and compare performance and robustness of ST episode detection algorithms. The tool supports all standard and other relevant performance measures, aggregate gross and average statistics, and bootst…


Published: Sept. 17, 2004. Version: 1.0.0

Software Open Access

Multiscale Entropy Analysis

The method of multiscale entropy (MSE) analysis is useful for investigating complexity in physiologic signals and other series that have correlations at multiple (time) scales.

entropy complexity

Published: Aug. 4, 2004. Version: 1.0