ECGSYN: A program for generating a realistic synthetic ECG
Copyright (C) 2003 by Patrick McSharry & Gari Clifford. All rights reserved.
Compiling ECGSYN
================
This directory contains sources for the C version of ECGSYN. Note, however,
that two additional files are required in order to compile ECGSYN. These
files (dfour1.c and ran1.c) are those included in Numerical Recipes in C
(http://www.nr.com/). Before attempting to compile ECGSYN, obtain these
two files from Numerical Recipes in C and place them in this directory.
(These files are missing from this directory because they cannot be freely
redistributed.)
If you cannot obtain dfour1.c and ran1.c, several alternatives are available,
including ready-to-run executable versions of ECGSYN for GNU/Linux, Solaris,
and MS-Windows (see the directory above this one), as well as Matlab/Octave
and Java implementations of ECGSYN. See http://www.physionet.org/ for details.
On most platforms, including GNU/Linux, MacOS X, and Unix, compile ECGSYN
by typing
make
in a terminal window. This will also work under MS-Windows if you have
installed the free Cygwin/gcc development toolkit (http://www.cygwin.com/).
If you wish to use another compiler under MS-Windows, you are on your own.
Running ECGSYN
==============
The executable version is named 'ecgsyn' (or, under MS-Windows, 'ecgsyn.exe').
Once you have this file, move it into any directory in your PATH and run
it by typing
ecgsyn
in a terminal window. You may add options (switches) to the 'ecgsyn' command;
the option '$', as in
ecgsyn $
starts 'ecgsyn' in interactive mode, as shown below:
>> ecgsyn $
ECGSYN: A program for generating a realistic synthetic ECG
Copyright (c) 2003 by Patrick McSharry & Gari Clifford. All rights reserved.
O Name of output data file "ecgsyn.dat"
n Approximate number of heart beats 256
s ECG sampling frequency [Hz] 256
S Internal Sampling frequency [Hz] 256
a Amplitude of additive uniform noise [mV] 0
h Heart rate mean [bpm] 60
H Heart rate standard deviation [bpm] 1
f Low frequency [Hz] 0.1
F High frequency [Hz] 0.25
v Low frequency standard deviation [Hz] 0.01
V High frequency standard deviation [Hz] 0.01
q LF/HF ratio 0.5
R Seed 1
(Type ? for Help)
->
At the prompt, you can then type ? for help, or simply specify each parameter
above that you want to change by typing the corresponding option letter (in the
first column above) followed by a space and the new value, then <enter>. To
review the current settings, enter a blank line. After you have modified all
the parameters you want, type = followed by <enter> to run the program. You may
also specify the parameters in a file called ecgsyn.opt, which is automatically
read (if it exists) the next time you run the program.
Any of the options can also be entered directly on the command line, by
prefixing the option letter with '-', as in:
ecgsyn -h 80 -n 100
(which would create output at a mean heart rate of 80 bpm, lasting for about
100 beats).
The source files opt.c and opt.h provide the option interpreter for ecgsyn;
they were written by James Theiler. For additional information, and for the
most recent version of 'opt', see http://nis-www.lanl.gov/~jt/Software/.
Interpreting ECGSYN's output
============================
Unless you have changed the name of the output file with the 'O' parameter,
you will find the synthetic ECG written to a text file called ecgsyn.dat,
which contains three columns:
* the time in seconds
* the ECG amplitude in millivolts
* markers to indicate the locations of the waveform peaks:
0 - (no peak)
1 - Top of P-wave
2 - Q-point
3 - Peak of R-wave
4 - S-point
5 - Peak of T-wave
To convert the ECG output into PhysioBank (WFDB) format, use a command
such as
wrsamp -F 256 -o synth -x 200 1 <ecgsyn.dat
(assuming you have not changed the default sampling frequency of 256 Hz).
This command produces a record named 'synth' (a signal file named 'synth.dat'
and a header file named 'synth.hea'), which can be read by other PhysioToolkit
applications. 'wrsamp' is part of the WFDB software package; see
http://www.physionet.org/physiotools/wfdb.shtml for details.
Further information
===================
The most recent version of this software can always be obtained from
http://www.physionet.org/physiotools/ecgsyn/
See IEEE Transactions on Biomedical Engineering, 50(3),289-294, March 2003.
Authors: P. McSharry (patrick AT mcsharry DOT net)
G. Clifford (gari AT mit DOT edu)