Resources


Model Credentialed Access

Clinical-T5: Large Language Models Built Using MIMIC Clinical Text

Eric Lehman, Alistair Johnson

We train a T5-Base and T5-Large from scratch on MIMIC-III and MIMIC-IV. Additionally, we further pretrain T5-Base and SciFive on notes from MIMIC. We release these model weights on PhysioNet.

Published: Jan. 25, 2023. Version: 1.0.0

Database Credentialed Access

Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization

Yanjun Gao, John Caskey, Timothy Miller, et al.

We introduce a hierarchical annotation suite of tasks addressing clinical text understanding, reasoning and abstraction over evidence, and diagnosis summarization. One task is section tagging major section and the other task is diagnosis generation.

Published: Sept. 30, 2022. Version: 1.0.0

Database Credentialed Access

Learning to Ask Like a Physician: a Discharge Summary Clinical Questions (DiSCQ) Dataset

Eric Lehman

Dataset of questions asked by medical experts about patients. Medical experts will read a discharge summary line-by-line and (1) ask any question that they may have and (2) record what in the text "triggered" them to ask their question.

question generation question answering machine learning

Published: July 28, 2022. Version: 1.0

Database Credentialed Access

RuMedNLI: A Russian Natural Language Inference Dataset For The Clinical Domain

Pavel Blinov, Aleksandr Nesterov, Galina Zubkova, et al.

RuMedNLI is the full counterpart dataset of MedNLI in Russian language.

natural language inference recognizing textual entailment russian language

Published: April 1, 2022. Version: 1.0.0

Database Credentialed Access

Curated Data for Describing Blood Glucose Management in the Intensive Care Unit

Aldo Robles Arévalo, Roselyn Mateo-Collado, Leo Anthony Celi

The data subsets consist of time series files that includes all the curated entries of glucose readings and insulin inputs from MIMIC-III database.

insulin replacement therapy glycemic control critical care

Published: April 19, 2021. Version: 1.0.1

Database Credentialed Access

MedNLI for Shared Task at ACL BioNLP 2019

Chaitanya Shivade

Data for the MedNLI Shared Task at the 2019 ACL BioNLP 2019 Workshop on Biomedical Language Processing

natural language inference recognizing textual entailment mimic

Published: Nov. 28, 2019. Version: 1.0.1

Database Credentialed Access

MedNLI - A Natural Language Inference Dataset For The Clinical Domain

Chaitanya Shivade

This is a resource for training machine learning models for language inference in the medical domain.

natural language inference recognizing textual entailment

Published: Oct. 1, 2019. Version: 1.0.0

Challenge Open Access

2018 IEEE BHI and BSN Data Challenge

Tom Pollard, Alistair Johnson, Jesse Raffa

A challenge to explore real clinical questions in critically ill patients using the MIMIC. A collaboration with the IEEE Conference on Biomedical and Health Informatics 2018 and the IEEE Conference on Body Sensor Networks.

weekend effect ieee challenge mimic

Published: Feb. 5, 2018. Version: 1.0

Database Credentialed Access

MIMIC-IV-ECHO-Ext-LVVOLUMES-A4C-ROI: Annotated Subset of Apical Four-Chamber Echocardiography for PoCUS-Style LV Volume and Function Analysis

Kamlin Ekambaram, Anurag Arnab, Philip Herbst, et al.

A curated subset of MIMIC-IV-ECHO providing apical four-chamber cine loops with manual ROI masks, volumetric labels, and ready-to-use MP4/NPZ derivatives for robust LV volume and ejection fraction research.

ultrasound deep learning echocardiography medical imaging dicom lvesv roi segmentation cardiac video analysis left ventricular volume mimic-iv-echo apical four-chamber quantitative cardiology biplane simpson transformer models lvef ejection fraction a4c pocus lvedv domain adaptation

Published: Feb. 26, 2026. Version: 1.0.0