Resources
Database Credentialed Access
TherLid: A Thermometry Linked Dataset
Jeremy Tan, Inês Martins, João Matos, Tiago Filipe Sousa Gonçalves, Tetsu Ohnuma, Jaime dos Santos Cardoso, Leo Anthony Celi, Vijay Krishnamoorthy, Andrea Lane, An Kwok Wong
thermometry intensive care unit health equity electronic health records
Published: Jan. 21, 2025. Version: 1.0.0
Database Credentialed Access
ENCoDE, mEasuring skiN Color to correct pulse Oximetry DisparitiEs: skin tone and clinical data from a prospective trial on acute care patients.
Sicheng Hao, Katelyn Dempsey, João Matos, Mahmoud Alwakeel, Jared Houghtaling, An Kwok Wong
Published: Aug. 22, 2024. Version: 1.0.0
Database Credentialed Access
EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries
Sunjun Kweon, Jiyoun Kim, Heeyoung Kwak, Dongchul Cha, Hangyul Yoon, Kwang Hyun Kim, Jeewon Yang, Seunghyun Won, Edward Choi
Published: June 26, 2024. Version: 1.0.1
Database Credentialed Access
ODD: A Benchmark Dataset for the NLP-based Opioid Related Aberrant Behavior Detection
Sunjae Kwon, Xun Wang, Weisong Liu, Emily Druhl, Minhee Sung, Joel Reisman, Wenjun Li, Robert Kerns, William Becker, Hong Yu
substance use natural language processing opioid related aberrant behavior
Published: Jan. 11, 2024. Version: 1.0.0
Challenge Credentialed Access
BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization
Yanjun Gao, Dmitriy Dligach, Timothy Miller, Majid Afshar
bionlp clinical natural language processing electronic health record summarization
Published: Nov. 12, 2023. Version: 2.0.0
Database Credentialed Access
BOLD, a blood-gas and oximetry linked dataset
João Matos, Tristan Struja, Jack Gallifant, Luis Filipe Nakayama, Marie Charpignon, Xiaoli Liu, Jaime dos Santos Cardoso, Leo Anthony Celi, An Kwok Wong
pulse oximetry intensive care unit health equity electronic health records
Published: Nov. 8, 2023. Version: 1.0
Database Open Access
MIMIC-IV Clinical Database Demo
Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark
critical care electronic health record mimic
Published: Jan. 31, 2023. Version: 2.2
Database Credentialed Access
Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization
Yanjun Gao, John Caskey, Timothy Miller, Brihat Sharma, Matthew Churpek, Dmitriy Dligach, Majid Afshar
Published: Sept. 30, 2022. Version: 1.0.0
Database Credentialed Access
Learning to Ask Like a Physician: a Discharge Summary Clinical Questions (DiSCQ) Dataset
Eric Lehman
question generation question answering machine learning
Published: July 28, 2022. Version: 1.0
Model Credentialed Access
Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes
Eric Lehman, Sarthak Jain, Karl Pichotta, Yoav Goldberg, Byron Wallace
Published: April 28, 2021. Version: 1.0.0