#!/bin/sh
# file: plot2d G. Moody 16 May 1995
# Last revised: 5 May 1999
#
# -----------------------------------------------------------------------------
# plot2d: Plot contents of stdin or a named file using 'gnuplot' in batch mode
# Copyright (C) 1999 George B. Moody
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, see <http://www.gnu.org/licenses/>.
#
# You may contact the author by e-mail (wfdb@physionet.org) or postal mail
# (MIT Room E25-505A, Cambridge, MA 02139 USA). For updates to this software,
# please visit PhysioNet (http://www.physionet.org/).
# _____________________________________________________________________________
#
# This shell script is a quick-and-dirty partial replacement for 'plt', which
# is available from http://www.physionet.org/physiotools/plt. 'plot2d' accepts
# a few of the most commonly-used `plt' options and produces similar plots.
#
# See `plot2d.1' (type `man plot2d') for usage and examples.
# Initialize variables.
CFILE=/tmp/gpcommands.$$ # gnuplot command file
TFILE=/tmp/gpdata.$$ # gnuplot data file (used only for piped input)
IFILE='-' # input file: '-' means use standard input
FMTFILE='-' # file containing additional GNUPLOT format commands
PRINTER='-' # printer name for lpr: '-' means don't print (plot on-screen)
PIPED=no # if 'yes', input is arriving via a pipe
TITLE='' # title for the top of the plot (may include spaces if quoted)
XCOL='-1' # column number for abscissas: -1 means use row numbers
XLABEL='' # label for x-axis (may include spaces if quoted)
XMIN='' # minimum abscissa for data to be included in the plot
XMAX='' # maximum abscissa for data to be included in the plot
XTICK='' # x-axis tick interval (currently ignored)
YCOL='-2' # column number for ordinates: -2 indicates YCOL not specified
YLABEL='' # label for y-axis (may include spaces if quoted)
YMIN='' # minimum ordinate for data to be included in the plot
YMAX='' # maximum ordinate for data to be included in the plot
YTICK='' # y-axis tick interval (currently ignored)
# Read the argument list and interpret the arguments.
while [ "x$1" != x ]
do
case $1 in
-t) TITLE=$2; shift ;;
-x) XLABEL=$2; shift ;;
-y) YLABEL=$2; shift ;;
-xa) XMIN=$2; shift; XMAX=$2; shift; XTICK=$2; shift ;;
-ya) YMIN=$2; shift; YMAX=$2; shift; YTICK=$2; shift ;;
-f) FMTFILE=$2; shift; ;;
-T) PRINTER=$2; shift ;;
-X) XMIN=$2; shift; XMAX=$2; shift ;;
-Y) YMIN=$2; shift; YMAX=$2; shift ;;
-1|0|1|2|3|4|5|6|7|8|9)
case $YCOL in
-2) YCOL=$1 ;;
*) XCOL=$YCOL; YCOL=$1 ;;
esac ;;
-*) echo "usage: plot2d [IFILE] [ [ XCOL ] YCOL ] [ OPTIONS ...]"
echo " IFILE is the input file. It should contain one or more space- or"
echo " tab-separated columns per line, with each point on a line. Omit"
echo " IFILE to read data from the standard input."
echo " XCOL specifies the column number of the abscissas. The leftmost"
echo " column is column 0. Omit XCOL to use row numbers as abscissas."
echo " YCOL specifies the column number of the ordinates. If YCOL is"
echo " omitted, plot2d plots column 1 vs. column 0."
echo " OPTIONS include:"
echo " -f FILE Include the contents of FILE as additional GNUPLOT"
echo " formatting commands"
echo " -h Print this help and exit (no plot is made)"
echo " -t TITLE Use TITLE as the plot title"
echo " -x LABEL Use LABEL as the X-axis label"
echo " -y LABEL Use LABEL as the Y-axis label"
echo " -X XMIN XMAX Plot abscissas between XMIN and XMAX only"
echo " -Y YMIN YMAX Plot ordinates between YMIN and YMAX only"
echo " -T PRINTER Plot on the specified PostScript PRINTER (default:"
echo " plot on-screen; use '-T eps' to generate"
echo " encapsulated PostScript on the standard output)"
exit 1 ;;
*) IFILE=$1 ;;
esac
shift
done
# Renumber the columns for gnuplot. Columns are numbered beginning with 1 by
# gnuplot, and beginning with 0 by plot2d (as in 'plt'). There are three
# possibilities, depending on how many of XCOL and YCOL were specified:
# Specified Columns plotted
# XCOL YCOL X Y
# no no 1 2
# no yes 0 (*) YCOL+1
# yes yes XCOL+1 YCOL+1
#
# (*) "Column 0" is the row number (line number) in gnuplot. To use the row
# number as the ordinate, specify YCOL as -1 in the plot2d argument list.
XCOL=`expr $XCOL + 1`
case $YCOL in
-2) XCOL=1; YCOL=2 ;;
*) YCOL=`expr $YCOL + 1` ;;
esac
# If receiving input from a pipe, save it in a file for plotting. (This
# program treats redirected standard input in the same way.)
case $IFILE in
-) IFILE=$TFILE; PIPED=yes; cat >$TFILE ;;
esac
# Generate the gnuplot command file.
#
# The first section is omitted unless a -T option has been specified. The
# "-T eps" option produces encapsulated PostScript on the standard output;
# use it to generate a figure to be included within another document, or to
# be rendered at a later time. gnuplot's PostScript options follow the
# "set terminal postscript ..." lines below. The commonly-used alternatives
# to those used here are "portrait" (instead of "landscape"), "color" (instead
# of "monochrome"), "Courier" or "Helvetica" (instead of "Times-Roman"), and
# "10", "12", or "16" (instead of "14", the type size in points). See the
# gnuplot manual for details if you wish to customize these options.
case $PRINTER in
-) cp /dev/null $CFILE ;;
eps) cat >$CFILE <<!
set terminal postscript eps
!
;;
*) cat >$CFILE <<!
set terminal postscript landscape monochrome "Times-Roman" 14
set output "| lpr -P$PRINTER"
!
;;
esac
# The next section of the gnuplot command file sets the plot parameters.
cat >>$CFILE <<!
set tics out
set title '$TITLE'
set xlabel '$XLABEL'
set ylabel '$YLABEL'
set xrange [$XMIN:$XMAX]
set yrange [$YMIN:$YMAX]
!
# If there are any other formatting commands (specified by the -f option),
# include them here.
case $FMTFILE in
-) ;;
*) cat $FMTFILE >>$CFILE ;;
esac
# For example, FMTFILE might contain the line
# set xtics("10 AM" 0, "Noon" 100, "2 PM" 200, "4 PM" 300)
# (omitting the initial '#'). This would replace the standard X-axis tick
# labels with those specified in the strings ("10 AM" at X=0, "Noon at X=100,
# etc.). See the GNUPLOT manual for details about this and other options.
# Finally write the command that will produce the plot itself.
cat >>$CFILE <<!
plot '$IFILE' using $XCOL:$YCOL notitle with lines
!
# The last section of the gnuplot command file is omitted if PostScript output
# is to be produced (either on a printer or to a file). Otherwise, the "pause"
# command causes gnuplot to prompt the user after it renders the plot.
case $PRINTER in
-) cat >>$CFILE <<!
pause -1 "Press <RETURN> to dismiss the plot window: "
!
;;
esac
# Make the plot by executing the gnuplot command file. Standard input is
# reattached to the user's keyboard so that the response to the prompt can
# be read.
gnuplot $CFILE </dev/tty
# Clean up and exit.
rm -f $CFILE $TFILE
exit 0