Resources


Database Credentialed Access

EHRXQA: A Multi-Modal Question Answering Dataset for Electronic Health Records with Chest X-ray Images

Seongsu Bae, Daeun Kyung, Jaehee Ryu, et al.

We present EHRXQA, the first multi-modal EHR QA dataset combining structured patient records with aligned chest X-ray images. EHRXQA contains a comprehensive set of QA pairs covering image-related, table-related, and image+table-related questions.

question answering machine learning electronic health records evaluation chest x-ray multi-modal question answering ehr question answering semantic parsing benchmark deep learning visual question answering

Published: July 23, 2024. Version: 1.0.0

Model Credentialed Access

Me-LLaMA: Foundation Large Language Models for Medical Applications

Qianqian Xie, Qingyu Chen, Aokun Chen, et al.

Me-LLaMA is a family of large language models for medical applications trained using clinical text with LLaMA2 models as the base. We release model weights for the foundation models as well as the chat-enhanced models.

large language models

Published: June 5, 2024. Version: 1.0.0

Model Credentialed Access

Asclepius-R : Clinical Large Language Model Built On MIMIC-III Discharge Summaries

Sunjun Kweon, Junu Kim, Jiyoun Kim, et al.

Asclepius: Publicly Available Clinical Large Language Models with Synthetic Clinical Notes Asclepius-R: A instruction-finetuned large language model with MIMIC-III clinical notes

clinical notes synthetic clinical notes synthetic notes asclepius open-source llm clinical llm large language model

Published: March 25, 2024. Version: 1.1.0

Database Open Access

A Comprehensive Dataset of Pattern Electroretinograms for Ocular Electrophysiology Research: The PERG-IOBA Dataset

Itziar Fernández, Ruben Cuadrado Asensio, Yolanda Larriba, et al.

336 CSV records with 1354 PERG responses (microvolts) from 304 subjects at IOBA. Includes age (years), gender, diagnoses, and visual acuity in logMar scale.

Published: Jan. 19, 2024. Version: 1.0.0

Database Credentialed Access

Medication Extraction Labels for MIMIC-IV-Note Clinical Database

Akshay Goel, Almog Gueta, Omry Gilon, et al.

Medication extraction NLP labels for 600 discharge summaries in MIMIC-IV-Note dataset.

Published: Dec. 12, 2023. Version: 1.0.0

Database Open Access

Integration of Electroencephalogram and Eye-Gaze Datasets for Performance Evaluation in Fundamentals of Laparoscopic Surgery (FLS) Tasks

Somayeh B Shafiei, Saeed Shadpour

Brain activity and eye gaze data were collected from a group of 25 participants who completed the FLS tasks using a trainer box (Pyxus®). Each participant performed the tasks five times, and their performance was evaluated by an expert rater.

Published: Aug. 23, 2023. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

RadQA: A Question Answering Dataset to Improve Comprehension of Radiology Reports

Sarvesh Soni, Kirk Roberts

RadQA is an electronic health record question answering dataset containing clinical questions that can be answered using the Findings and Impressions sections of radiology reports

machine reading comprehension radiology reports question answering clinical notes electronic health records

Published: Dec. 9, 2022. Version: 1.0.0

Database Open Access

Cerebromicrovascular Disease in Elderly with Diabetes

Vera Novak, Rodrigo Quispe

Type 2 diabetes increases risk for cerebrovascular disease, cognitive and mobility decline in older people. This project evaluated relationship between diabetes, inflammation cerebrovascular reactivity and functional outcomes.

gait and balance brain perfusion inflammation type 2 diabetes cerebromiscovascular disease cerebral vasoreactivity brain atrophy perfusion mri

Published: Aug. 5, 2022. Version: 1.0.1

Visualize waveforms

Database Credentialed Access

Learning to Ask Like a Physician: a Discharge Summary Clinical Questions (DiSCQ) Dataset

Eric Lehman

Dataset of questions asked by medical experts about patients. Medical experts will read a discharge summary line-by-line and (1) ask any question that they may have and (2) record what in the text "triggered" them to ask their question.

question generation question answering machine learning

Published: July 28, 2022. Version: 1.0

Database Credentialed Access

Critical care database comprising patients with infection at Zigong Fourth People's Hospital

Ping Xu, Lin Chen, Zhongheng Zhang

Routinely collected data from critical care units at Zigong Fourth People’s Hospital, Sichuan, China for patients admitted between January 2019 and December 2020 Missing information on temperature are updated in the new version.

Published: June 30, 2022. Version: 1.1