Resources


Database Credentialed Access

Paediatric Intensive Care database

Haomin Li, Xian Zeng, Gang Yu

PIC (Paediatric Intensive Care) is a large paediatric-specific, single-centre, bilingual database comprising information relating to children admitted to critical care units at a large children’s hospital in China.

intensive care pediatrics critical care natural language processing

Published: Nov. 12, 2020. Version: 1.1.0

Database Restricted Access

Gout Emergency Department Chief Complaint Corpora

John David Osborne, Tobias O'Leary, Amy Mudano, et al.

A corpus of chief complaints tagged with predicted gout flare status and chart reviewed gout flare status. Ideal for input to masked language model training to supplement lengthy clinical text notes.

gout emergency department nlp

Published: Oct. 19, 2020. Version: 1.0

Database Credentialed Access

MIMIC-III - SequenceExamples for TensorFlow modeling

Jonas Kemp, Kun Zhang, Andrew Dai

MIMIC-III data converted into TensorFlow SequenceExample format, for use in modeling pipelines.

tensorflow sequence modeling machine learning deep learning

Published: Sept. 29, 2020. Version: 1.0.0

Database Credentialed Access

Phenotype Annotations for Patient Notes in the MIMIC-III Database

Edward Moseley, Leo Anthony Celi, Joy Wu, et al.

Clinical notes, annotated by at least two expert annotators for over ten patient phenotypes, including advanced cancer, substance abuse, and treatment non-adherence.

patient classification natural language processing

Published: March 5, 2020. Version: 1.20.03

Database Credentialed Access

MedNLI for Shared Task at ACL BioNLP 2019

Chaitanya Shivade

Data for the MedNLI Shared Task at the 2019 ACL BioNLP 2019 Workshop on Biomedical Language Processing

natural language inference recognizing textual entailment mimic

Published: Nov. 28, 2019. Version: 1.0.1

Database Credentialed Access

MedNLI - A Natural Language Inference Dataset For The Clinical Domain

Chaitanya Shivade

This is a resource for training machine learning models for language inference in the medical domain.

natural language inference recognizing textual entailment

Published: Oct. 1, 2019. Version: 1.0.0

Database Open Access

CUILESS2016

A corpus of Concept Unique Identifier concepts taken from the SemEval2015 Task 14.

concept umls snomed

Published: Jan. 24, 2018. Version: 1.0.0

Database Open Access

STAFF III Database

The STAFF III database was acquired during 1995–96 at Charleston Area Medical Center (WV, USA) where single prolonged balloon inflation had been introduced to achieve optimal results of percutaneous transluminal coronary angiography (PTCA) pro…

angiography ecg

Published: Jan. 31, 2017. Version: 1.0.0

Visualize waveforms

Challenge Credentialed Access

ShAReCLEF eHealth 2013: Natural Language Processing and Information Retrieval for Clinical Care

Danielle Mowery

2013 ShARe/CLEF eHealth Evaluation Lab: Natural Language Processing and Information Retrieval for Clinical Care (Tasks 1 and 2).

natural language processing

Published: Feb. 15, 2013. Version: 1.0

Database Open Access

Examples of Electromyograms

An electromyogram (EMG) is a common clinical test used to assess function of muscles and the nerves that control them. EMG studies are used to help in the diagnosis and management of disorders such as the muscular dystrophies and neuropathies. Nerve…

neuropathy electromyogram

Published: Sept. 5, 2009. Version: 1.0.0

Visualize waveforms