Resources
Database
Restricted Access
Bowen Wang, Jiuyang Chang, Yiming Qian
A diagnostic reasoning dataset designed to evaluate the performance of large language models in aligning with human doctors when making diagnoses from clinical notes.
Published: Jan. 21, 2025.
Version: 1.0.0
Database
Credentialed Access
Dana Moukheiber, William Temps, Bhadrappa Molgi, et al.
A freely available COVID-rich ICU database comprising de-identified health-related data from Northwestern Memorial Health Center (NHMC).
Published: Nov. 19, 2024.
Version: 0.1.0
Model
Credentialed Access
Kenneth Kehl, Pavel Trukhanov, Christopher Fong, et al.
The DFCI-imaging-student and DFCI-medonc-student AI models for extracting cancer outcomes from imaging reports and medical oncologist notes from electronic health records.
Published: Oct. 24, 2024.
Version: 1.0.0
Database
Contributor Review
Eulalia Farre Maduell, Salvador Lima-Lopez, Santiago Andres Frid, et al.
CARMEN-I is a Spanish corpus of 2,000 clinical records from Hospital Clínic, Barcelona. It covers COVID-19 patients and comorbidities, serving as a resource for training clinical NLP models and researchers in NLP applied to clinical documents.
de-identification
clinical ner
anonymization
Published: April 20, 2024.
Version: 1.0.1
Database
Open Access
Alistair Johnson, Lucas Bulgarelli, Tom Pollard, et al.
An openly available subset of patients in the MIMIC-IV database.
critical care
electronic health record
mimic
Published: Jan. 31, 2023.
Version: 2.2
Database
Credentialed Access
Eric Lehman
Dataset of questions asked by medical experts about patients. Medical experts will read a discharge summary line-by-line and (1) ask any question that they may have and (2) record what in the text "triggered" them to ask their question.
question generation
question answering
machine learning
Published: July 28, 2022.
Version: 1.0
Database
Credentialed Access
Ping Xu, Lin Chen, Zhongheng Zhang
Routinely collected data from critical care units at Zigong Fourth People’s Hospital, Sichuan, China for patients admitted between January 2019 and December 2020 Missing information on temperature are updated in the new version.
Published: June 30, 2022.
Version: 1.1
Database
Credentialed Access
Yasuhide Miura, Yuhao Zhang, Emily Tsai, et al.
A radiology NLI dataset introduced in the paper: Improving Factual Completeness and Consistency of Image-to-text Radiology Report Generation
Published: June 29, 2021.
Version: 1.0.0
Database
Credentialed Access
Haomin Li, Xian Zeng, Gang Yu
PIC (Paediatric Intensive Care) is a large paediatric-specific, single-centre, bilingual database comprising information relating to children admitted to critical care units at a large children’s hospital in China.
pediatrics
critical care
natural language processing
intensive care
Published: Nov. 12, 2020.
Version: 1.1.0
Database
Restricted Access
John David Osborne, Tobias O'Leary, Amy Mudano, et al.
A corpus of chief complaints tagged with predicted gout flare status and chart reviewed gout flare status. Ideal for input to masked language model training to supplement lengthy clinical text notes.
gout
emergency department
nlp
Published: Oct. 19, 2020.
Version: 1.0